Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0625 ATGGAAGACAATAAAGAAAGTAAAATGATATCGGCTGCGGCCTTTGTAGAAGGGGGGATTCAAGACTCCTGTGATGATGCTTGCAGCATATGTCTTGAGGAGTTTTCTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCTTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAGGAGAGGAAGTTGAGGGTTGCCACATCAAGAAATGCTTCTATTTTTCATCACCCTGCATTATTGCAGCACTTGCGCATGAATGTAAATGATATTGAGCTTGAAGAGCAAATTATTCAACATTTAGCTGTTGCTGCAGCAATGAGGAGAGCAGACCAACTTGGCCGTAGGGCAGGACGACACGCTAATTCATCACCTCGTGGTCATCCACACTCATCGGTGTTATCTAATATGGCACCTGCTGAAGAAGAAAATGACAAAACGAGTATTCCTAATACAAGTGCATCTACTCCAATAAAATCTGAGAGATATGGAGCATTGCAACAGATGCTGCGAGTTCGAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGAATTTACTCCAATGATAGAGGCTCTACTACTCCCTCGTCATCAGTAAACGGCGATAAAGCAGAGTTCCAGTCACATTCTGATTCGCTGCGGTCCAGACTCAATGCGGTGTCTGCGAGATACAAAGAATCAATCTCAAAGGGTGCAAGGGGATGGAAGGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATTCTGATATTTCTAGTGTATCCCGACTAAAGGAATCCCTTGAATCTAGTGAGAATAGTAAAGCTGTGGGTACTTCTTTGTCTAGTCATATGGAGGATTGTTCCATTGGAGAGGTGAGCAATCACAATGATGTTGAAGTTAGCGGGGAGACCTCTTCACATGATGACAATACTCCACCTGCTTGTTCTGCTACCTCACATTTAAATTGA 1068 0.4345 MEDNKESKMISAAAFVEGGIQDSCDDACSICLEEFSASDPSTLTNCKHEFHLHCILEWCQRSSQCPMCWQSISLKDLTSQELFEAVEQERKLRVATSRNASIFHHPALLQHLRMNVNDIELEEQIIQHLAVAAAMRRADQLGRRAGRHANSSPRGHPHSSVLSNMAPAEEENDKTSIPNTSASTPIKSERYGALQQMLRVRTQSSSSASGSRIYSNDRGSTTPSSSVNGDKAEFQSHSDSLRSRLNAVSARYKESISKGARGWKERLFCRSCSMSELGSETRRREMNSDISSVSRLKESLESSENSKAVGTSLSSHMEDCSIGEVSNHNDVEVSGETSSHDDNTPPACSATSHLN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0625 355 MobiDBLite consensus disorder prediction 142 186 - -
Vra3g0625 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 99 IPR013083 -
Vra3g0625 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 1 352 - -
Vra3g0625 355 MobiDBLite consensus disorder prediction 278 355 - -
Vra3g0625 355 SUPERFAMILY RING/U-box 22 75 - -
Vra3g0625 355 MobiDBLite consensus disorder prediction 153 186 - -
Vra3g0625 355 MobiDBLite consensus disorder prediction 198 240 - -
Vra3g0625 355 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 352 - -
Vra3g0625 355 SMART ring_2 28 68 IPR001841 -
Vra3g0625 355 MobiDBLite consensus disorder prediction 292 355 - -
Vra3g0625 355 Pfam Ring finger domain 27 68 IPR001841 -
Vra3g0625 355 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0625 Vra-Chr3 6833704 6837336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0625 25 76 C3H Transcription Factor Family AT4G00335 44.231 1.24e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0625 K19043 - gmx:100800419 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0625 3 6833704 6837336 Vra3g0625 3 6833704 6837336 ECH
Vra3g0625 3 6833704 6837336 Vra8g0164 8 1916153 1921082 PCT