Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0622 ATGGGAAACAATTGTGTCGGGTCAAAAATCTCGGATTATACACTGTTTTCCTGTGTTTTTCCCAGTTCATTGGTGTGGCCTCATGGTCATCAAATGGTGGTCACAGAAATTTCTGATCCAACTTCACCTGTGACTAAAATTGAAGAAAAAAATGCTCCAGAGAATGTTCAGGAAAAGCCTCCACGAGTGGTGAAAATTAACAAAGAGATTAACATGCCTTCGGAGCCTGCAAATAAAAAAATAGCCCGTAAAGTCAAGAGGGTAGCCATAGGGCTTCGAGAAGAATCAATTTTGAAGAGAAAAAGTGGTCACTTTAAGGAGTACTATAATTTGGGAGAAGAGCTTGGAAAGGGACAATATGGAACAACATTCCTGTGTACTGAGAAAGCAACCGGGAAAAAGTACGCTTGCAAGTCCATTCCTAAAGTGAAACTGCTGATAGATGAGGACGTGGAAGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATTAAAGGGGCTTTTGAGGATGGTGTTGCAGTTCATGTTGTGATGGAGTTATGTGAAGGGGGTGAACTTTTTGATAGAATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTCAACTTGCAAGGACTATAGTTAGTATTATAGAAGGTTGCCACTCCCTCGGGGTGATGCATCGTGATCTTAAACCTGAGAATTTTCTTTTTGTTGATGGGAATGAAGAGTCCACACTTAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGGGAAACTTTTAGGGACGTGGTTGGAAGTCCTTATTATATCGCACCTGAAGTTCTACGAAGGCATTATGGTCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTTTTATGTGGAAAACCTCCATTTTGGGGTGAATCTGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTTACTTCAGATCCTTGGCCGAATATCTCTGAAAGTGCTAGAGACTTGGTCAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAAGTCGATGGAGTAGCTCCGGACAAGCCTCTTGACTCTGCAGTTTTGAGCCGCCTGAAGCAGTTTTCTGTAATGAACAAGCTAAAGAAAATGGCTCTTAGAGTTATTGCAGAGAACCTCTCAGAAGAAGAAATTTCTGAACTGAAAGTAGCGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTAGAAAAGCTGAAAGCTGGATTAAAAATGCTTGGTAATAATCTCAGTGAACCAGAAATTTTGGACCTAATGCAAGCTGCAGACGTTGATAACAGTGGCACAATTGACTATAGGGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTCACAGAGAAGATCATTTAGTTGCAGCTTTTTCATTTTTTGATAGAAGTGGAAGCGGCTACATCACTCAAGATGAACTTCAAAAAGCCTGTGAAGAATTTGGTATTGAGAATGTATGCTTTGAGGAAATGATCCAAGAAGCTGATCAGAATAACGATGGCCGAATAGACTACGATGAATTCGTGGCTATGATGATGAAAGGCAATGCTGATTTAGGTATAAACAGGATAAAGGGTGGCACTGATTTTAGCATTGGATTTAGGGAGGCACTATCAGTGTGTTGA 1725 0.4052 MGNNCVGSKISDYTLFSCVFPSSLVWPHGHQMVVTEISDPTSPVTKIEEKNAPENVQEKPPRVVKINKEINMPSEPANKKIARKVKRVAIGLREESILKRKSGHFKEYYNLGEELGKGQYGTTFLCTEKATGKKYACKSIPKVKLLIDEDVEDVRREIEIMHHLEGCPNVISIKGAFEDGVAVHVVMELCEGGELFDRIVERGHYTERKAAQLARTIVSIIEGCHSLGVMHRDLKPENFLFVDGNEESTLKAIDFGMSVFFKPGETFRDVVGSPYYIAPEVLRRHYGPEADVWSAGVIIYILLCGKPPFWGESEQEIFEEVLHGDLDFTSDPWPNISESARDLVRKMLVRDPRKRITAHEVLRHPWIQVDGVAPDKPLDSAVLSRLKQFSVMNKLKKMALRVIAENLSEEEISELKVAFKMIDTDNSGQITLEKLKAGLKMLGNNLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVHREDHLVAAFSFFDRSGSGYITQDELQKACEEFGIENVCFEEMIQEADQNNDGRIDYDEFVAMMMKGNADLGINRIKGGTDFSIGFREALSVC* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0622 574 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Vra3g0622 574 ProSitePatterns EF-hand calcium-binding domain. 529 541 IPR018247 -
Vra3g0622 574 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Vra3g0622 574 Gene3D - 379 550 - -
Vra3g0622 574 SMART efh_1 450 478 IPR002048 GO:0005509
Vra3g0622 574 SMART efh_1 520 548 IPR002048 GO:0005509
Vra3g0622 574 SMART efh_1 414 442 IPR002048 GO:0005509
Vra3g0622 574 SMART efh_1 486 514 IPR002048 GO:0005509
Vra3g0622 574 SMART serkin_6 109 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0622 574 ProSiteProfiles Protein kinase domain profile. 109 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0622 574 Pfam Protein kinase domain 109 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0622 574 Gene3D Transferase(Phosphotransferase) domain 1 185 378 - -
Vra3g0622 574 SUPERFAMILY Protein kinase-like (PK-like) 107 368 IPR011009 -
Vra3g0622 574 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Vra3g0622 574 SUPERFAMILY EF-hand 396 547 IPR011992 -
Vra3g0622 574 Gene3D Phosphorylase Kinase; domain 1 89 184 - -
Vra3g0622 574 ProSiteProfiles EF-hand calcium-binding domain profile. 521 551 IPR002048 GO:0005509
Vra3g0622 574 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Vra3g0622 574 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Vra3g0622 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vra3g0622 574 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vra3g0622 574 Pfam EF-hand domain pair 487 545 IPR002048 GO:0005509
Vra3g0622 574 Pfam EF-hand domain pair 414 475 IPR002048 GO:0005509
Vra3g0622 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 552 - -
Vra3g0622 574 CDD STKc_CAMK 109 366 - -
Vra3g0622 574 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 76 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0622 Vra-Chr3 6814145 6818430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0622 43 574 EF-hand Containing Proteins AT3G10660 69.533 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra3g0622 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0622 K13412 - gmx:100814475 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0622 3 6814145 6818430 Vra8g0590 8 9182093 9189021 PCT
Vra8g0160 8 1879272 1883837 Vra3g0622 3 6814145 6818430 PCT