Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0616 ATGAGCAGCAACACTGCAGTTAATTCCCCTGGATTCCTCGGCTCAAGCAACATCAGTAGCTACAGTTATGGCATAGGAATCTCCATTGGAATTCTGTTGCTCATCATAACTATCACTCTAACTTCCTACTTCTGCACCAGAACACATGTCTCATTTGCTCCAGCTGCCAGGAACAGAACATTCACTCCGAATGCTCTTCAACCAAACCACTCTGTTGTTGATGTCAGTTTGGATGAAGCCACCATTCTGAGTTATCCAACCCTGCTATACTCTGAAGCCAAAACTCAGAAGTCTGATTCCACTGCAACATGTTGCTCCATTTGCTTGGCAGATTACAAGGACACTGATATGCTTCGCATGCTACCTGATTGTGAACACCAATTCCACCTCAAATGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCGATTCCAACACCCCTTTCAACTCCTCTGGCTGAAGTGGTTCCATTTGCTACTGTACGAGATTCTTGA 516 0.4477 MSSNTAVNSPGFLGSSNISSYSYGIGISIGILLLIITITLTSYFCTRTHVSFAPAARNRTFTPNALQPNHSVVDVSLDEATILSYPTLLYSEAKTQKSDSTATCCSICLADYKDTDMLRMLPDCEHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPFATVRDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0616 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Vra3g0616 171 Pfam Ring finger domain 105 147 IPR001841 -
Vra3g0616 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vra3g0616 171 SMART ring_2 105 146 IPR001841 -
Vra3g0616 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 167 - -
Vra3g0616 171 CDD RING-H2_PA-TM-RING 104 147 - -
Vra3g0616 171 SUPERFAMILY RING/U-box 86 152 - -
Vra3g0616 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 167 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0616 Vra-Chr3 6767827 6768409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0616 11 167 C3H Transcription Factor Family AT2G35910 60.377 7.23e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0616 - - vun:114162275 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0616 3 6767827 6768409 Vra8g0153 8 1739711 1740541 PCT