Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0615 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACACAATTCTGTGGGGGCCCTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAGCCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCATGCTGCTAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTTTGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAGGAAATCTGCTAATGGAAATGGCAAAACTGGCAATGAAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAGTTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGAGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGACCTTCTGTCCACAGTCTTGCAGACATGATAGATGGTGGGCGTGGTATGATCGTACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA 993 0.4532 MAMQTVYLKEHEGNAHNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHHAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAFAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNEVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGPSVHSLADMIDGGRGMIVPPKWAAAAGNCCNLKV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0615 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Vra3g0615 330 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 329 - -
Vra3g0615 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Vra3g0615 330 MobiDBLite consensus disorder prediction 241 280 - -
Vra3g0615 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Vra3g0615 330 Gene3D - 160 222 - -
Vra3g0615 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Vra3g0615 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Vra3g0615 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 329 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0615 Vra-Chr3 6730591 6735325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0615 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.241 1.81e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra3g0615 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0615 K08064 - gmx:100815382 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0615 3 6730591 6735325 Vra8g0150 8 1704839 1709057 PCT