Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0614 ATGGCTGCTGCAGCTTCTTTTTCCTCCTCTATCTGCAACAGAATATACAACCTTTCCCTCACCAACTCTTCCATTTCACGCACCTCCATCTTCCTTCAGAGACCCATTTTCCAAAAGCCACCCAATCTTAGCCACAAGTCACAAAGTTTCAGTCTTTCATTTCTCCCACTTCATCGTCTGTCCCCACCGTTCGCCACCTTCGATGGTTTGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAAGTTTCAGACTCCAGCGATAACGATGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGCAGCGTGGTGTCTGTTGAGATTGTGTATGATCGCGTCACGGGTAGAAGCAGGGGATTCGCATTTGTTACAATGGCGAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCGAAGGTAAACTTCCCAGAGGTACCGAAAGGCGGGGAAAGATTGGTAATGGGGGCAAAAGTGAGGGAGAACTACAGAGGGTTTGTAGACAGCCCTCACAAGATCTATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAAGTCGTCTATGAGAAGGACAGCGGAAGATCTCGAGGTTTCGGCTTTGTTTCTTTCACAACTGCTGAGTCTGCAGCAGCTGCCTTGGACTTTATGAATGGTGTGGAAGTACAAGGTCGGCCATTGCGGTTGAATTTGGCTGAGGCTAGGACAGCATCATCTCCTCCAGGAATCAATGTTGAAAGCTCGGAATTGGTCTCAAGTGCCACAACATAA 939 0.4803 MAAAASFSSSICNRIYNLSLTNSSISRTSIFLQRPIFQKPPNLSHKSQSFSLSFLPLHRLSPPFATFDGLEVGQDITESRQDEPVTETSEKTEQEEERKVSDSSDNDAGRLYIGNLPYSITNSQLAELFGEAGSVVSVEIVYDRVTGRSRGFAFVTMASVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKVRENYRGFVDSPHKIYCGNLGWGVNSQGLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMNGVEVQGRPLRLNLAEARTASSPPGINVESSELVSSATT* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0614 312 PANTHER OS02G0815200 PROTEIN 4 297 - -
Vra3g0614 312 Gene3D - 198 298 IPR012677 -
Vra3g0614 312 SUPERFAMILY RNA-binding domain, RBD 209 293 IPR035979 GO:0003676
Vra3g0614 312 CDD RRM_HP0827_like 110 186 - -
Vra3g0614 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Vra3g0614 312 MobiDBLite consensus disorder prediction 76 105 - -
Vra3g0614 312 Gene3D - 70 193 IPR012677 -
Vra3g0614 312 SUPERFAMILY RNA-binding domain, RBD 103 185 IPR035979 GO:0003676
Vra3g0614 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Vra3g0614 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Vra3g0614 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Vra3g0614 312 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 297 - -
Vra3g0614 312 MobiDBLite consensus disorder prediction 76 106 - -
Vra3g0614 312 SMART rrm1_1 110 183 IPR000504 GO:0003723
Vra3g0614 312 SMART rrm1_1 213 286 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0614 Vra-Chr3 6725211 6729615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0614 96 291 Eukaryotic Initiation Factors Gene Family AT3G16380 32.500 1.25e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0614 - - gmx:100814852 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0614 3 6725211 6729615 Vra8g0631 8 10234773 10237290 PCT