Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0612 ATGAACGACTTGTTATCGAGTTTGTTCTCAAAGGGAAAGCAGCAGCAGCAACAACAAGAAGGGCAGCACGTGATTGAAATAACACAAGGTGGCATGGGCTTGGACAAGTTCTTCAAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTCACAGCCCCAAGGGTGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTCGCTCTTGCTCTCACCAAAGCCAAGCTTGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGCCCGACTGCGGACCCGGTTCGTACTCCCACCGGACCCGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTTAATAAGCTGAGGGACCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCCGTCACTGGAGAGAACCCTGATCCTGACACCATTGATCTCCTCATCTCTACGGGTGAGAGTGAAAGTTTCTTACAGAAAGCCATCCAACAGCAAGGGCGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTAAAAGAGATAGAGAGAAGTCTACACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGCGCTTGCCAATTCCTCCGTCAGCAAAGGTGTGCATCATTTGCAGGTTGTGAAGAATCATCAGAAGAACACCCGTAACTTGACCTGCTTTGCCATACTCCTCTTCATTATCGTTTTGGTCATAGTTCTCCCCATTGTTTTCAGAAGTTGA 897 0.5095 MNDLLSSLFSKGKQQQQQQEGQHVIEITQGGMGLDKFFKEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLPDCGPGSYSHRTRTALVGALTKNLKQSMESFNKLRDQISYEYRDTVQRRYYAVTGENPDPDTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLVQHQGEHLDDIESHMALANSSVSKGVHHLQVVKNHQKNTRNLTCFAILLFIIVLVIVLPIVFRS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0612 298 Pfam SNARE domain 242 292 IPR000727 -
Vra3g0612 298 CDD SynN 34 191 IPR006011 GO:0016020
Vra3g0612 298 Gene3D - 193 297 - -
Vra3g0612 298 SMART tSNARE_6 199 266 IPR000727 -
Vra3g0612 298 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Vra3g0612 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Vra3g0612 298 PANTHER SYNTAXIN 13 293 IPR045242 -
Vra3g0612 298 Coils Coil 34 61 - -
Vra3g0612 298 Gene3D - 34 161 - -
Vra3g0612 298 PANTHER SYNTAXIN-121 13 293 - -
Vra3g0612 298 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra3g0612 298 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g0612 298 SMART SynN_4 29 155 IPR006011 GO:0016020
Vra3g0612 298 CDD SNARE_syntaxin1-like 203 264 - -
Vra3g0612 298 Pfam Syntaxin 36 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0612 Vra-Chr3 6711454 6713651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0612 28 278 SNARE and Associated Proteins AT3G11820 62.550 1.05e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0612 K08486 - gmx:100790221 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0612 3 6711454 6713651 Vra8g0146 8 1660812 1662938 PCT