Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0611 ATGCAAGACTTGTTGTCCACCACCTCCTCCCGTAGCAACCGGTTTCCGCCATCGTCGGCTCACAGTGTCATCGAGATGGCAGGCTGCGACGACGACGATGGACCAACGAGCCTGGCCACGTACTTCGGCAACGTCGAAGCAATAACGGAAGAGCTGAACAAGGTGGAGCGGTTGAAGCAGAATCTGAAGAGGTCTCACGAACAAGGCAAGACCCTTCACAATGGTAAAGCCGTGAAGGACCATCGCTTCGCCATGGAAGCTGACGTGGCACTCGCTCTGGAGACCGCGAAGCTCATCATGTTCAAGTTGGAGACGCTTGAACGCGCCAACGCAGACCACCGGAGCCTCCCCGGTTGTGGACCCGGTTCGTCCTCCGACCGGTCCCGAACATCCGTGGTGTTCTCCCTGAGGAAGAAGCTGAAGGACTCCTTGGACGGCTTCAATGAACTCCGTCACCAGATAAATGTAGAACACCGTGAGACCGTCCAGCGCCAATACTTCACGGTCACGGGCAAAAATCCCGACGACGAAACCCTGGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTAGTAGAAAGAGCGATTGAGGAGGGTAGAGGAAGAATTGAGGAGACTATTAAGGAAATAAAAGAGAGGCATAGTGGGATGAAAGAGTTAGAGAGGAATCTGAAGGAGTTGCACCAGGTGTTCCTTGACATGGGAGTGCTTGTTCAATCTCAAGGTGAGCAATTGGATGACATAGAAAGGCAGGTGGCAAGAACAAACTCCTTCGTCAGGAATGGGACTCAGAATCTGGAAACTGCAAGGAAGGAGCAAAAAAAACACCATAAATGGGGCTACTGTGCTATTATCCTTCTTCTTGCAATTGTGTTGTTCGTCGTGCTCTACTTTGTCAGACCATGGCGAAAGTAA 915 0.5158 MQDLLSTTSSRSNRFPPSSAHSVIEMAGCDDDDGPTSLATYFGNVEAITEELNKVERLKQNLKRSHEQGKTLHNGKAVKDHRFAMEADVALALETAKLIMFKLETLERANADHRSLPGCGPGSSSDRSRTSVVFSLRKKLKDSLDGFNELRHQINVEHRETVQRQYFTVTGKNPDDETLDLLISSGESENLVERAIEEGRGRIEETIKEIKERHSGMKELERNLKELHQVFLDMGVLVQSQGEQLDDIERQVARTNSFVRNGTQNLETARKEQKKHHKWGYCAIILLLAIVLFVVLYFVRPWRK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0611 304 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra3g0611 304 PANTHER SYNTAXIN 16 298 IPR045242 -
Vra3g0611 304 CDD SNARE_syntaxin1-like 206 268 - -
Vra3g0611 304 Pfam SNARE domain 243 295 IPR000727 -
Vra3g0611 304 SMART SynN_4 33 159 IPR006011 GO:0016020
Vra3g0611 304 SMART tSNARE_6 202 269 IPR000727 -
Vra3g0611 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Vra3g0611 304 Coils Coil 45 68 - -
Vra3g0611 304 Gene3D - 38 165 - -
Vra3g0611 304 SUPERFAMILY t-snare proteins 38 262 IPR010989 GO:0016020|GO:0016192
Vra3g0611 304 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 16 298 - -
Vra3g0611 304 CDD SynN 38 189 IPR006011 GO:0016020
Vra3g0611 304 Pfam Syntaxin 41 242 IPR006011 GO:0016020
Vra3g0611 304 Gene3D - 202 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0611 Vra-Chr3 6705693 6706607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0611 26 302 SNARE and Associated Proteins AT3G11820 58.633 1.74e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0611 K08486 - tcc:18598421 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0611 3 6705693 6706607 Vra8g0145 8 1657152 1660070 PCT