Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0608 ATGGACAACGAGATCGATGTTCCTTCCTTCTTCGTCTGCCCCATTTCCTTAGAAATAATGAAGGATCCGGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTTTCCAAGAAAAATACCACATGCCCCGTCACCAAACAACCCTTGATGGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCCGTTAACAGGACACAGATTACTAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCGTATGCCTCCGAAGACTCAAATCCATCGCTTCAGGAAGCGAGACAAATAAGCGATGCATGGAGGCTGCGGGTGCCGTTGAATTCCTGGCATCCATTGTAATGAACAACAACAGCAATAGCAACGATTCTTCAAATGGGGCTGACCCAAGTGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAGCCTGCTTCACACGCTTGATTTAACTGAACAAGGGTTGAAGACTCTTCTTGGCTTCAGAAACGGAGATTTTATTGAGTCTTTGACGAGAGTGATGCAGAAAGGGTTCTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGCAACTGTTGCATCTAAGACAAGAAATTTTCGTGGAACTAGTACAAGTCTTGAGGGATCAGATTTCAACGAAGACATCAAAGGATATCCTTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGGTGAAGGCCGTGGAAGCAGGAGCAGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGCGAGATGATGCTGGTGCTGTTGGAGATACTGTGCCAGTGTGCGGAGGGAAGAGCAGAACTATTGAGTCACGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTCTAAGAGTTTCGACATTGGCAAATGATAGGGCTGTTAGGATTCTTCTTTCTGTGTCCAAGTTCTCTGCGACTCCACATGTTGTTCAAGAGATGCTGAAACTGGGTGTGGCGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCGAAGGAAAAGGCAAGAGAGATACTCAAGTTGCATGCTCGGGCGTGGAAGAATACTCCATGCATACCCAACAATTTGCTTTCTTCATACCCGGCTTATGCGTGA 1266 0.47 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPVTKQPLMDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNRTQITKLLKDASHSPLVCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNSNSNDSSNGADPSDGSGFELKTTASDEALSLLHTLDLTEQGLKTLLGFRNGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQEIFVELVQVLRDQISTKTSKDILQTLIQFSPWGRNRVKAVEAGAVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLSVSKFSATPHVVQEMLKLGVAAKLCLVLQVDSGNKAKEKAREILKLHARAWKNTPCIPNNLLSSYPAYA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0608 421 SUPERFAMILY RING/U-box 4 83 - -
Vra3g0608 421 PANTHER WDSAM1 PROTEIN 3 418 IPR045185 GO:0061630
Vra3g0608 421 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Vra3g0608 421 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Vra3g0608 421 CDD RING-Ubox_PUB 11 54 IPR045210 -
Vra3g0608 421 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Vra3g0608 421 Gene3D - 98 406 IPR011989 -
Vra3g0608 421 SUPERFAMILY ARM repeat 113 333 IPR016024 -
Vra3g0608 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 418 - -
Vra3g0608 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0608 Vra-Chr3 6665314 6666902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0608 1 419 U-box Gene Family AT3G52450 57.727 3.51e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0608 - - gmx:100811258 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0608 3 6665314 6666902 Vra3g0608 3 6665314 6666902 ECH
Vra3g0608 3 6665314 6666902 Vra8g0140 8 1581273 1583086 PCT
Vra8g0141 8 1597709 1599478 Vra3g0608 3 6665314 6666902 PCT