Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0606 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCAGGTTACATCCACTACTCCGACGCACCGTCGCAGCCCCCGCCCTCACACGCTGCGGGAAATCTCGTCTTTCTCAACCCCGCCGCGGTTGCCGGCGCCAACAGCAACGGCTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGGGCACCACGATGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCACTGGAACGCATTAGACCCGGCTTCAGCGGCGCGTGATACCCCACGCGCGCAGCAGGGCTTGTCTCTGGGTCTGGGGTCGTTCCGGGAGGGTCAGGCTCCGGGCATGTCCGGCGACGACTTGCGCGTGTCAGGGGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAACGGAGCTTCGGGCATTCAGAGCGTTCTCCTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTGGAAGAGGTTGTGAATGTTAACAATGGGATTGGCACCGAGTTGGGTAAAAAGAGTGGGGGACAAACGAAGGTGATTGGAGAATCATCCGCAGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGTAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTGATTGCCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCATCATTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGAACATACACGGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGTTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTGAGGCAGCAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGACTCGGACAAACACATGTTGGCAAAGCAAACAGGGCTAACAAGGAGCCAGGTCTCAAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCAACGAAAATGGCAGCTCCACCAGAGAAAGGTCCTTCCAATGAAACCGAGGCGAAAAGTTTCAATTCCAAACAAGAAGTTTCAAAGAACCAGAACACTGCTATGGCTTCAGTTTCTAGACCATCAACTTCACCACTTGGTGGGAGTGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCTTCAGAGCTGGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAGCAACTCTCAATGAAATTTGGTGACGAAAGGCAAGGCAGAAACGAATCCTCATTCATGGGAAACCAAACAAACTTCATCGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCTCCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGATTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACAATTCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2040 0.5015 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAVAGANSNGSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHGHHDVSALHGFLPRMQYNHWNALDPASAARDTPRAQQGLSLGLGSFREGQAPGMSGDDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKSGGQTKVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPEKGPSNETEAKSFNSKQEVSKNQNTAMASVSRPSTSPLGGSVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINNSSPHSSAAYESISMQNPKRFAAQLLPDFVT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0606 679 MobiDBLite consensus disorder prediction 434 450 - -
Vra3g0606 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Vra3g0606 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Vra3g0606 679 Pfam Associated with HOX 178 314 IPR006563 -
Vra3g0606 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Vra3g0606 679 MobiDBLite consensus disorder prediction 207 246 - -
Vra3g0606 679 MobiDBLite consensus disorder prediction 156 170 - -
Vra3g0606 679 Gene3D - 366 445 - -
Vra3g0606 679 MobiDBLite consensus disorder prediction 139 170 - -
Vra3g0606 679 MobiDBLite consensus disorder prediction 434 544 - -
Vra3g0606 679 SMART prehox3 173 315 IPR006563 -
Vra3g0606 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Vra3g0606 679 Coils Coil 247 274 - -
Vra3g0606 679 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 621 - -
Vra3g0606 679 MobiDBLite consensus disorder prediction 467 520 - -
Vra3g0606 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 621 - -
Vra3g0606 679 SMART HOX_1 363 427 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0606 Vra-Chr3 6636025 6640474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0606 1 678 Homeobox Transcription Factor Family AT2G35940 50.135 1.34e-178 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra3g0606 POX 3.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0606 - - gmx:100810901 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0606 3 6636025 6640474 Vra3g0606 3 6636025 6640474 ECH
Vra3g0606 3 6636025 6640474 Vra8g0139 8 1569656 1573801 PCT