Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0603 ATGCTCCACTCTTCGCTAACTCTCCTCTTCATCCTCCTCTTTTCCCTCACCACTGCCGACCCGCACGACGCCGAAATACTGCGCCAATTCCGAAAAGGGTTGGACAACCCGGAACTGTTACCATGGCCGGACAGCGGCGATGACCCGTGTGGTTGGAAGTACATTTTCTGCGACAATAAGAACCGCGTGAACCAGATTCAGGCGAAGGGGTTGAACCTGAGCGGTCCTCTTCCGCAGAACCTGAACCAGCTCACAAATCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTGCCCTCCTTCCGCGGCCTGTCAAATCTCAAATACTTGTATCTTGACAACAACGACTTCGACTCCATACCTTCAGATTTCTTCGATGGGCTCCAGAGTTTGGAAGTGCTCGCCTTGGATAATAATAAACTTAACGCCAGCTCCGGCGGCTGGCACTTACCGCAAACGCTCCAGGGTTCAACGCAGTTGACCAATCTCTCCTGTATGGGCTGCAACCTCGCCGGTCCATTGCCCGAGTTTCTCGGAACAATGAACTCGCTGTCGTTTTTGAAGCTCTCCAACAACAACTTGACGGGAGAGATTCCCCCGAGTCTAAACGGCTCCGCGTTGCAGGTTCTCTGGCTGAATAACCAGCAGGGGGAGCTTCTTACTGGAAGAATTGACGTTGTGGCCTCCATGGTTTCGCTCATGAGTTTGTGGCTTCACGGGAACGCATTCACTGGAACGATTCCCGATAACATTGGGGATTTGAGCTCCCTACGGGATCTTAACGTTAATGGGAACAACCTCGTTGGGTTGGTTCCTCAAGGTTTGGGTGACCTGAAGCTGGACAAACTGGACTTGAACAACAACCATTTTATGGGTCCGATTCCCAATTTTAAAGCGGCTCAAGTGTCTTATACTAATAACGATTTTTGTGTGAACAAGTCAGGGGTTCCTTGCGCGTTTGAGGTGATGGCGCTGTTGGGGTTCCTTGGGGGGTTGAATTATCCTGAGAATTTGGTTGACTCGTGGAGTGGGAATGATCCTTGTGGGGGTCAGTGGTTGGGGATAAAGTGTAATGTTGATGGAAAGGTGAATATGATTAATTTGCCGAATATGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTTGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGCGGTCCCTGGTAATTGGAGTAGTTTGTCGTCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCATTGCCTTTGTTTAAGACTGGATTGAAACCTATTGTTACTGGGAATCCTCTCCTCAATGGTGGTGCGGAAAATCCTTCATCAGGGAGCAAGAGCCCATCATCTGGATCTGGTAATGTCGACCCCGCATCGGGTCAGTCCAATTCTAGTTCGAGTGATTCTCGTGAAACTAAGAAATCTAAACGGAAAGGGTTGGTTTCCATCGTTGCTCCGATTGCGGGAGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAGAGGACGAAGGGTGGCTTCCAGGCACCAACCTCACTGGTAATTCACCCTAGGGATCCATCGGATTCTGACAGTGTTGTGAAGATTGCTGTTGCTAACAATACAAATGGAAGCATTTCCAATTTGACAGGGAGTGGTTCTGGGAGTAGGAATAGTAGTGGAATTGGGGAGTCTCATGTCATTGACGCTGGAAATCTTAGAATATCAGTCCAAGTTCTCAGGAACGTGACCAAGAATTTTGCGCCCGAGAACGAGCTTGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGAACAAAAATTGCAGTGAAACGAATGGAAGCTGGTGTGATTAGTAGCAAGGCATTGGATGAATTCCAGGCTGAGATTGCGGTTCTATCAAAAGTCCGGCACCGGCATCTGGTATCTCTTTTGGGTTATTCTATAGAAGGTAATGAAAGGATTCTGGTGTATGAATATATGCCACAAGGGGCTCTAAGTAAGCATCTTTTCCATTGGAAAAGCCTTGAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCAAAGGTCTCAGATTTTGGTTTGGTAAAACTTGCTCCTGAAGGTGAAAAATCTGTAGTTACCAGGCTTGCAGGGACTTTCGGATATTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACAAAAGCGGATGTTTTCAGTTTTGGGGTCGTGCTAATGGAGCTATTGACTGGATTAATGGCACTTGACGAGGACAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATCAAATCAGATAAGAAGAAGCTAATGGCTGCTATTGACAAAGCCCTTGATGTTAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCTGAATTAGCAGGGCACTGCACTGCCAGAGAACCGAGCCAGCGGCCAGAGATGGGTCATGCCGTAAATGTGCTGGCACCGCTTGTTGAAAAATGGAAACCCTTTGATGATGACACTGAGGAGTATTCTGGGATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACATGAGTTATATGGACCTAGAAGACAGTAAGAGCAGTATCCCCGCAAGGCCTACCGGATTTGCAGATTCTTTTACATCAGCTGATGGCCGTTAA 2829 0.4754 MLHSSLTLLFILLFSLTTADPHDAEILRQFRKGLDNPELLPWPDSGDDPCGWKYIFCDNKNRVNQIQAKGLNLSGPLPQNLNQLTNLFNVGLQNNRLNGPLPSFRGLSNLKYLYLDNNDFDSIPSDFFDGLQSLEVLALDNNKLNASSGGWHLPQTLQGSTQLTNLSCMGCNLAGPLPEFLGTMNSLSFLKLSNNNLTGEIPPSLNGSALQVLWLNNQQGELLTGRIDVVASMVSLMSLWLHGNAFTGTIPDNIGDLSSLRDLNVNGNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAAQVSYTNNDFCVNKSGVPCAFEVMALLGFLGGLNYPENLVDSWSGNDPCGGQWLGIKCNVDGKVNMINLPNMNLSGSLSPSVANLGSLVEIRLGGNDISGAVPGNWSSLSSLTLLDLSGNNISPPLPLFKTGLKPIVTGNPLLNGGAENPSSGSKSPSSGSGNVDPASGQSNSSSSDSRETKKSKRKGLVSIVAPIAGVAAAAFLLIPLYAYCFKRTKGGFQAPTSLVIHPRDPSDSDSVVKIAVANNTNGSISNLTGSGSGSRNSSGIGESHVIDAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDKALDVKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDMSYMDLEDSKSSIPARPTGFADSFTSADGR* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0603 942 Pfam Protein kinase domain 599 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0603 942 PANTHER OSJNBA0070M12.3 PROTEIN 9 942 - -
Vra3g0603 942 SUPERFAMILY L domain-like 20 301 - -
Vra3g0603 942 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0603 942 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 9 942 - -
Vra3g0603 942 CDD STKc_IRAK 602 875 - -
Vra3g0603 942 MobiDBLite consensus disorder prediction 916 942 - -
Vra3g0603 942 SUPERFAMILY Protein kinase-like (PK-like) 574 872 IPR011009 -
Vra3g0603 942 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Vra3g0603 942 SMART serkin_6 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0603 942 Gene3D Ribonuclease Inhibitor 20 320 IPR032675 -
Vra3g0603 942 Gene3D Transferase(Phosphotransferase) domain 1 674 892 - -
Vra3g0603 942 MobiDBLite consensus disorder prediction 442 487 - -
Vra3g0603 942 Pfam Leucine rich repeat 108 151 IPR001611 GO:0005515
Vra3g0603 942 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Vra3g0603 942 MobiDBLite consensus disorder prediction 446 479 - -
Vra3g0603 942 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Vra3g0603 942 SUPERFAMILY L domain-like 324 435 - -
Vra3g0603 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Vra3g0603 942 Pfam Leucine rich repeat N-terminal domain 21 58 IPR013210 -
Vra3g0603 942 Pfam Leucine rich repeat N-terminal domain 325 361 IPR013210 -
Vra3g0603 942 Gene3D Ribonuclease Inhibitor 323 445 IPR032675 -
Vra3g0603 942 SMART LRR_typ_2 184 208 IPR003591 -
Vra3g0603 942 SMART LRR_typ_2 257 280 IPR003591 -
Vra3g0603 942 SMART LRR_typ_2 233 256 IPR003591 -
Vra3g0603 942 SMART LRR_typ_2 107 130 IPR003591 -
Vra3g0603 942 SMART LRR_typ_2 411 433 IPR003591 -
Vra3g0603 942 SMART LRR_typ_2 131 159 IPR003591 -
Vra3g0603 942 Gene3D Phosphorylase Kinase; domain 1 561 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0603 Vra-Chr3 6572561 6576166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0603 81 909 Receptor kinase-like Gene Family AT1G55610 30.594 4.39e-82 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra3g0603 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0603 - - gmx:100305366 1586.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0603 3 6572561 6576166 Vra3g0603 3 6572561 6576166 ECH
Vra3g0603 3 6572561 6576166 Vra8g0136 8 1527901 1531889 PCT