Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0598 ATGGCCGATAAGCAACCCCATTTGAATGGTGCTTATTACGGTCCCGCCATTCCCACAGCGGAACCACCACGCTACCGCCCTCAACGCGAAAGAGGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGTACTCATCGTTCTCGTTGGCCTCGCAATCCTCATATTCTGGCTGGTTGTTCAACCCCGCTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGAGTACAACGCCGACAACAGCACCCTCGACTACAACATGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAACATCTACTACGACAAAGTGGAAGCATTGGCATTCTACAAGGATGCCCGATTCTCCAATGACGATGTGATAACGCACATGAACTCGTTCAGGCAGTACACGAAGAGCAGCAACCCCATGAGCGCTGTTTTCTCAGGCCAGCAGGTGGTGACACTAAACAATGAACAAGTATCTCAGTTGAACGAACACAAGAGTGAAGGCGTTTACGAATTCTATGTTAGGCTCAACTTCAGGATTCGATACAGACTTGGTGATGTTATCTCTGGTGACTTCAAACCCAAGGCCAAATGTCATATCAAGGTTCCATTCGCTAACAGTGCCTCTCAACCTTTTCAGACTACCAAGTGCGACATCGATTACTAG 681 0.489 MADKQPHLNGAYYGPAIPTAEPPRYRPQRERGCCCCLFGILWKILVVLIVLVGLAILIFWLVVQPRSFKFHVTEADLTQFEYNADNSTLDYNMVLNFTARNPNKKLNIYYDKVEALAFYKDARFSNDDVITHMNSFRQYTKSSNPMSAVFSGQQVVTLNNEQVSQLNEHKSEGVYEFYVRLNFRIRYRLGDVISGDFKPKAKCHIKVPFANSASQPFQTTKCDIDY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0598 226 Pfam Late embryogenesis abundant protein 97 198 IPR004864 -
Vra3g0598 226 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 18 224 - -
Vra3g0598 226 PANTHER OS05G0367900 PROTEIN 18 224 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0598 Vra-Chr3 6531091 6531915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0598 62 214 SNARE and Associated Proteins AT1G32270 29.412 1.31e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0598 - - gmx:100807701 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0598 3 6531091 6531915 Vra8g0129 8 1439442 1440316 PCT