Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0585 ATGGGCAAGAAAATGAAGCTTCCTTCCCTCCTCCACAAGAACTCACACCCCAAACCTTCTTCTACTTCCTGGCCATGGCCCTCTTGCCACCAACCTCGAACCCTCTCTTTTCGAGACCAAAACGATGTCTCTTTCAAAACCATCAACCCAGCCTACTTCGACATGCCCGAGAGCTCTCACTCCTTCTTCACTGTCTCTCCTGACTCTGGAAGCTTCTCAACAGCTTCAGAAGAAGATTCTAGAAGACCGGATTCCCTTGAGACCCTCATTCGCCCCTTGCCTTCCGACCGTTTGTTCTTCCACCCCGACCAGACAAGCTCCATATTAGAGTCCAAAGCAGGAACATCAACACCAACACCAACACAAGCAACTACAACACCAACACCACCAACCACAACAACAACAACGTTGCCCTTCAAAGACAGTGTGGTTATGTCTGTGGAGTCTCAGGACCCTTACGTGGACTTCCTCAGGTCCATGGAAGAGATGGTGGAAGCCCAGTGCGTTAAAGACTTTGATGGTCTCCAAGAGCTTTTATGTTGGTATTTGAAAGTCAATGGAAAAAGCAACCATGGTTATATTGTTGGTGCTTTCATTGATCTATTGGTGGCTTTTTCTGATATAAACTCTCATTCTCCTTCTTCCCCTTTATCATTCTACAGCTCTTCTCTTTCTTCCTCTTGCAGCACTCACTGTGTTTCATGTTTGGAAGCTGAAGACGAGGTTGATACAGCTACCCCTAATTCTTCTTTCTTGTTAGAACAAGTTAGGGAAGACCAGTCTTCATCTTCTTCTTCATCCTCTTTGAATTAA 813 0.4576 MGKKMKLPSLLHKNSHPKPSSTSWPWPSCHQPRTLSFRDQNDVSFKTINPAYFDMPESSHSFFTVSPDSGSFSTASEEDSRRPDSLETLIRPLPSDRLFFHPDQTSSILESKAGTSTPTPTQATTTPTPPTTTTTTLPFKDSVVMSVESQDPYVDFLRSMEEMVEAQCVKDFDGLQELLCWYLKVNGKSNHGYIVGAFIDLLVAFSDINSHSPSSPLSFYSSSLSSSCSTHCVSCLEAEDEVDTATPNSSFLLEQVREDQSSSSSSSSLN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0585 270 MobiDBLite consensus disorder prediction 1 41 - -
Vra3g0585 270 MobiDBLite consensus disorder prediction 14 41 - -
Vra3g0585 270 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 242 IPR038933 GO:0045892
Vra3g0585 270 ProSiteProfiles OVATE domain profile. 143 204 IPR006458 -
Vra3g0585 270 MobiDBLite consensus disorder prediction 109 137 - -
Vra3g0585 270 Pfam Transcriptional repressor, ovate 149 204 IPR006458 -
Vra3g0585 270 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 143 205 IPR006458 -
Vra3g0585 270 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0585 Vra-Chr3 6436938 6438108 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra3g0585 Ovate 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0585 - - vun:114179778 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0585 3 6436938 6438108 Vra8g2592 8 43854263 43855430 ECH
Vra3g0585 3 6436938 6438108 Vra3g0585 3 6436938 6438108 ECH
Vra3g0585 3 6436938 6438108 Vra8g0116 8 1276021 1276907 PCT