Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0576 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGACCGACCAACAACAGGCCGCAACGTGGCTGGGAAACTCTCACACTCCTCGTTTCAACCTGAATGACAACCAGGAGGAGATGGAGGATGAAGAAGAGGAGGTGATGGAGAAGGCTGCTGCTTCTGTTGATGGGGCGGCGGCGGCGGCGGAGGAAGAGGAGGAGAAGGAAGCCATGTTCGAGAAGCCGCTGACGCCGAGCGACGTGGGAAAGCTGAACCGGTTGGTGATCCCGAAACAGCACGCTGAGAAGCACTTCCCGCTGGAGTCGTCGTCATCGTCGTCGTGCGGTGACAGCGCGAAGGGCGTGTTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTGAAGGACAAACGCCTCCACGCTGGCGACGTTGTTTTCTTCCACAGACACCGCACCCATCCTCAACGCTTCTTCATCAACTCCTCCCGCCGCCAAGCCAACCCCCCCGCAAACGTTACCACCACCGCAACACCCTCCTCCTACTCTGCGCACCCTTATCCTGCGCATCAGCTCCCTTTCCCATACCAACCTCACTCCCTTCATGCAGCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAAGGATTCCCAAAACTCCACGCCACAATCCTCTTACACTCTCTCCTCAACACCAACAACACTTTCCCACCACCACCTCTTACACCCTCATACAACCTCTTTTTCTTCTTCTTCTTCCTCCTCCACCCCTCACCATTACCACATGCTACGTCAACAACCGTAA 927 0.5545 MSINHYSPEARLYWTDQQQAATWLGNSHTPRFNLNDNQEEMEDEEEEVMEKAAASVDGAAAAAEEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFINSSRRQANPPANVTTTATPSSYSAHPYPAHQLPFPYQPHSLHAAPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPDKDSQNSTPQSSYTLSSTPTTLSHHHLLHPHTTSFSSSSSSSTPHHYHMLRQQP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0576 308 MobiDBLite consensus disorder prediction 26 75 - -
Vra3g0576 308 MobiDBLite consensus disorder prediction 176 308 - -
Vra3g0576 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 26 266 IPR044800 GO:0003700
Vra3g0576 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 26 266 - -
Vra3g0576 308 MobiDBLite consensus disorder prediction 222 238 - -
Vra3g0576 308 Gene3D - 60 190 IPR015300 -
Vra3g0576 308 MobiDBLite consensus disorder prediction 253 308 - -
Vra3g0576 308 SUPERFAMILY DNA-binding pseudobarrel domain 70 177 IPR015300 -
Vra3g0576 308 CDD B3_DNA 72 169 IPR003340 GO:0003677
Vra3g0576 308 Pfam B3 DNA binding domain 73 176 IPR003340 GO:0003677
Vra3g0576 308 Coils Coil 31 69 - -
Vra3g0576 308 MobiDBLite consensus disorder prediction 176 201 - -
Vra3g0576 308 SMART B3_2 73 180 IPR003340 GO:0003677
Vra3g0576 308 ProSiteProfiles B3 DNA-binding domain profile. 73 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0576 Vra-Chr3 6344293 6349245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0576 66 271 RAV Transcription Factor Family AT5G06250 48.636 1.79e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra3g0576 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0576 - - var:108328437 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0576 3 6344293 6349245 Vra3g0576 3 6344293 6349245 ECH
Vra3g0576 3 6344293 6349245 Vra8g0638 8 10397376 10399450 PCT