Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0573 ATGTGTGTTGAGCCCGTTTACTCTGCGAATGTGCCATGCATCATAAACTCTTCGTTTCCCTTATTCTCTGTCTGCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGCCAATAAAAATAAAAATTTGTCGCCATCTCTTTTTTCTTTTCGCCGAGGAATTGCCTACAAGCTTTTTGTTGGAGGGCTGTCCTTCTTCACCACAGAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTCTTGAAGCCAAAGTTGTAACAGATAGGGTGTCAGAAAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCAGCAGACGAGGCTGAGAATGCCATTGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATTTTTGTTGATTATGCAAAACCCAATACCAACATTAATGGTGCGATGCCAATTGCTAGAGGACCACCTAAACCAACACCAGAAACTTGA 480 0.4208 MCVEPVYSANVPCIINSSFPLFSVCNIELNSMAAVRKIIQANKNKNLSPSLFSFRRGIAYKLFVGGLSFFTTEKALSEAFSNYGQVLEAKVVTDRVSERSKGFGFVTFASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNINGAMPIARGPPKPTPET* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0573 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Vra3g0573 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Vra3g0573 159 Gene3D - 33 153 IPR012677 -
Vra3g0573 159 SMART rrm1_1 61 134 IPR000504 GO:0003723
Vra3g0573 159 SUPERFAMILY RNA-binding domain, RBD 60 151 IPR035979 GO:0003676
Vra3g0573 159 PANTHER TRANSFORMER-2-RELATED 32 157 - -
Vra3g0573 159 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 32 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0573 Vra-Chr3 6317388 6318807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0573 62 137 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 5.79e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0573 - - var:108327579 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0573 3 6317388 6318807 Vra3g0573 3 6317388 6318807 ECH