Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0570 ATGTGGGCAAGCGCAGAAGGTGGTGCTCCAGAGGTTACTCTTGAAACTTCTATGGGGTCCTTCACAGTGGAGCTGTACTACAAGCATGCGCCCAGAACTTGCAGGAACTTCATTGAACTGTCTCGCAGAGGTTACTACGACAACGTTAAATTCCACAGGATCATTAAGGACTTCATAGTACAAGGTGGGGATCCTACTGGAACTGGAAGAGGAGGAGAATCCATATACGGTGCAAAGTTTGAAGATGAGATAAAACGAGAGTTGAAACACACTGGAGCTGGTATCTTATCCATGGCAAATGCTGGCCCAAATACCAATGGTAGTCAGTTCTTTATTACTCTTGCACCTTGCCCTTCTCTCGATGGAAAACACACAATATTCGGAAGAGTGTGTAGGGGAATGGAAATTATCAAACGACTTGGCAGCGTCCAAACAGATAACAACGATAGGCCCATCCATGACGTGAAGATACTGCGTACCTCAGTGAAGGATTAG 495 0.4566 MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0570 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 161 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Vra3g0570 164 Gene3D - 2 164 IPR029000 -
Vra3g0570 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1 5 163 - -
Vra3g0570 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Vra3g0570 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755
Vra3g0570 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Vra3g0570 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 163 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0570 Vra-Chr3 6293187 6304114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0570 12 162 U-box Gene Family AT5G67530 49.669 2.66e-50 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0570 K12733 - gmx:100786302 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0570 3 6293187 6304114 Vra3g0570 3 6293187 6304114 ECH