Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0566 ATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTCATCTCCTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAAGACATGAATCGTGTTATTCCAGTGGTTGATATTTACGACTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTCTTTTTCATTCCGAGGCAAGAGAGTGAAGCACGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATAATAGGCATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGAACACAATGAGGCATTCGATTGCTGAAAATGGTGAAGAGCAAGAAAAGGGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCGCCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCACCCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAATCATGA 753 0.4529 MDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTMRHSIAENGEEQEKGYDYHQHQMLERSATCSPESSSSGDLDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0566 250 ProSiteProfiles NAC domain profile. 4 157 IPR003441 GO:0003677|GO:0006355
Vra3g0566 250 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 243 - -
Vra3g0566 250 MobiDBLite consensus disorder prediction 163 187 - -
Vra3g0566 250 MobiDBLite consensus disorder prediction 199 216 - -
Vra3g0566 250 Gene3D NAC domain 13 161 IPR036093 GO:0003677|GO:0006355
Vra3g0566 250 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vra3g0566 250 MobiDBLite consensus disorder prediction 199 234 - -
Vra3g0566 250 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 243 - -
Vra3g0566 250 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0566 Vra-Chr3 6251573 6253074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0566 7 243 NAC Transcription Factor Family AT3G44350 45.267 3.94e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra3g0566 NAM 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0566 - - gmx:100777948 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0566 3 6251573 6253074 Vra3g0566 3 6251573 6253074 ECH