Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0555 ATGCTTGTTAAAATGGACATGTCAAATCCTGCAGCCTTTGTCAGTGCAGAAATACTGCACTTTTATGTTGGAAGGAGAGTAAGGGCCCTGATGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGGAAATCAACAGATGAGAAACAGCTAATAGTAAAAGGATTTCCCCCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAACAGTGATAAGTCAATTGCTGCTGAGATATGGATCAATTTTGGTGATTCCATCGATATGTTCAACTACAACAAGCTCTGTCAGCTTGCAAATGGAGAACTTAAATACCTGTTCCTTGATAGCATTTTACATCGGATTCTGTGCACTGAAGATTGTGAAACTTATCAGACTGCATTGTCCGCTATGCCTTTGCCAGATGTTAAGACACTGTCCAAGGACTAA 435 0.4046 MLVKMDMSNPAAFVSAEILHFYVGRRVRALMQVVRSDGGVVIGKSTDEKQLIVKGFPPAPLTTFVEVFGIVNSDKSIAAEIWINFGDSIDMFNYNKLCQLANGELKYLFLDSILHRILCTEDCETYQTALSAMPLPDVKTLSKD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0555 144 CDD RPA3 10 102 - -
Vra3g0555 144 Pfam Replication factor A protein 3 7 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vra3g0555 144 SUPERFAMILY Nucleic acid-binding proteins 7 102 IPR012340 -
Vra3g0555 144 Gene3D - 7 113 IPR012340 -
Vra3g0555 144 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 3 110 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0555 5 110 Core DNA Replication Machinery Family AT4G18590 59.434 8.50e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0555 K10740 - gmx:100306641 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0555 3 6152380 6156254 Vra3g0555 3 6152380 6156254 ECH
Vra3g0555 3 6152380 6156254 Vra8g1143 8 26399652 26410574 PCT