Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0554 ATGCAAAAAATGCCTGGGGCAGGACATAGAGATGTATTACCGGAGGGAAACAGTGAGCCTGAGAAACCTGCAGATTCTGATGAGCAAGTAGACTTTGACGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAAGAAGTAGAAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTCTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGTGTATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGATACGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAATAACACTGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACGAAGTTGTGTCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGACCCACAGATCTCTGGCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAAACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAAAGCAGATATGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTAGAGTGTTCACTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAGTCGGCTATACTTCCTACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCAATAGGTGCAGGATATGGTGGTGCTATAGGAGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCTGGACCAGCACCTCCTGGCATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGCATGCTCCGATGCTGGAATCCCAACATAGGAGGAGGGGCAGCGGTAGTTCAGGTGGTGGGAAACGAAGTAATGATAATAACAGCAATAGTGGGCGTGGCCGATATCATCCCTACTAA 1500 0.4413 MQKMPGAGHRDVLPEGNSEPEKPADSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEVEEEEEEEEEEEEVEVEEEEEEEEEVEETKPSDVKDETGVTDTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMNEVVSEIGPGVISVELLKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSNFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSAILPTYPPHLGYGMVGGAIGAGYGGAIGAGYGAAGFAQPLMYGPGPAPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPMLESQHRRRGSGSSGGGKRSNDNNSNSGRGRYHPY* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0554 499 MobiDBLite consensus disorder prediction 14 29 - -
Vra3g0554 499 Gene3D - 282 412 IPR012677 -
Vra3g0554 499 MobiDBLite consensus disorder prediction 90 107 - -
Vra3g0554 499 CDD RRM_SF 122 194 - -
Vra3g0554 499 PANTHER GEO13361P1-RELATED 14 496 - -
Vra3g0554 499 MobiDBLite consensus disorder prediction 30 89 - -
Vra3g0554 499 PANTHER - 14 496 - -
Vra3g0554 499 MobiDBLite consensus disorder prediction 1 107 - -
Vra3g0554 499 Gene3D - 15 200 IPR012677 -
Vra3g0554 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 282 IPR000504 GO:0003723
Vra3g0554 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 365 IPR000504 GO:0003723
Vra3g0554 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 268 IPR000504 GO:0003723
Vra3g0554 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Vra3g0554 499 SUPERFAMILY RNA-binding domain, RBD 117 374 IPR035979 GO:0003676
Vra3g0554 499 MobiDBLite consensus disorder prediction 465 499 - -
Vra3g0554 499 Gene3D - 201 281 IPR012677 -
Vra3g0554 499 SMART rrm2_1 295 368 IPR003954 GO:0003676
Vra3g0554 499 SMART rrm2_1 121 194 IPR003954 GO:0003676
Vra3g0554 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Vra3g0554 499 MobiDBLite consensus disorder prediction 471 499 - -
Vra3g0554 499 SUPERFAMILY RNA-binding domain, RBD 198 287 IPR035979 GO:0003676
Vra3g0554 499 Coils Coil 35 88 - -
Vra3g0554 499 SMART rrm1_1 201 278 IPR000504 GO:0003723
Vra3g0554 499 SMART rrm1_1 121 194 IPR000504 GO:0003723
Vra3g0554 499 SMART rrm1_1 295 368 IPR000504 GO:0003723
Vra3g0554 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0554 Vra-Chr3 6143627 6149920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0554 122 444 Eukaryotic Initiation Factors Gene Family AT4G34110 25.067 9.05e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0554 K13161 - gmx:100798476 631.713