Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0539 ATGGTGGTTGAAGAGAGTGAGATGAATTCCCAACAAGATGGCAACAAGAACCACCATTCTCAGTTCCCACCATCGTCCATTGGAAGACAGACATCCATATATTCTCTTACACTCGACGAGTTCCAGCACAGTCTATGCGAGACTGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGTAGCGTCTGGAACGCTGAAGAGAATCAAGCCATAATAACCTCTTCCAATGTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACGCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCACTCTCTCTCCCTCCACCTCTATCCAGGAAAACCGTCGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGATGTTCTGAATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGGGAACAACCATCTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCGCAGCCGCAGCAGCAGCAGCATTACCCGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGTAGGAATGTTATTGGTGCAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGTGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGGGTCCCACGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGACGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACTGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACGCCCAACTGAGACAGGCGTTGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAGCAAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAG 1203 0.4879 MVVEESEMNSQQDGNKNHHSQFPPSSIGRQTSIYSLTLDEFQHSLCETGKNFGSMNMDEFISSVWNAEENQAIITSSNVPLSQPFTDKDPTTLRKQPSLPRQPSLSLPPPLSRKTVDEVWSQIQKEQHDSTNNNDVLNNTESAPRQPTFGEMTLEDFLVKAGVVREQPSAPPQLSHHSHHLQHQQQPQPQPQQQQHYPSNNGAMPGMGSPFVGRNVIGAVSNVVAPGYQVGEASGGYAVNGKRDGGAVFHQQGVSFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLEMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLRQALAELERRRKQQIFEELSNISVQANAQKVKEKDKLRALRRYMSYP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0539 400 MobiDBLite consensus disorder prediction 77 101 - -
Vra3g0539 400 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 316 331 IPR004827 GO:0003700|GO:0006355
Vra3g0539 400 Coils Coil 329 370 - -
Vra3g0539 400 CDD bZIP_plant_BZIP46 313 367 - -
Vra3g0539 400 SMART brlzneu 309 373 IPR004827 GO:0003700|GO:0006355
Vra3g0539 400 MobiDBLite consensus disorder prediction 125 147 - -
Vra3g0539 400 MobiDBLite consensus disorder prediction 168 209 - -
Vra3g0539 400 Pfam bZIP transcription factor 313 365 IPR004827 GO:0003700|GO:0006355
Vra3g0539 400 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g0539 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 311 363 IPR004827 GO:0003700|GO:0006355
Vra3g0539 400 MobiDBLite consensus disorder prediction 171 202 - -
Vra3g0539 400 MobiDBLite consensus disorder prediction 77 149 - -
Vra3g0539 400 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 11 399 IPR043452 GO:0003700|GO:0045893
Vra3g0539 400 SUPERFAMILY Leucine zipper domain 313 362 IPR046347 GO:0003700|GO:0006355
Vra3g0539 400 Gene3D - 311 363 - -
Vra3g0539 400 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 11 399 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0539 Vra-Chr3 6059100 6062822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0539 5 368 bZIP Transcription Factor Family AT2G36270 49.642 4.09e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra3g0539 bZIP_1 6.8e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0539 K14432 - gmx:100818567 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0539 3 6059100 6062822 Vra3g0539 3 6059100 6062822 ECH
Vra3g0539 3 6059100 6062822 Vra8g0670 8 11690917 11695588 PCT