Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0533 ATGGCCGAAGAACACCCATGCCAAGCTCCCGAGGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGCAGCCCCGCCACCATGAATCTCTGTTCTAAATGCTACAGAGACATCCGACTCAAGGAAGAAGAACAGGCCAAAACTAAATCCACCATCGAAACTGCTCTGTCTTCATCCTCCGCCGCAGCAACAGCAACCGTCGCCTCCGCCACCGCTGTGGTTTCCTCGCCTGCTGCGCCGGTTGAATCCCTCCCTCAACCGGCGGTGGTGTCCGCGCCGGACGCGTGCGCGCCGCTTCAAGCGAACCGGTGTGGCGCGTGTCGTAAGCGCGTGGGGTTGACCGGGTTTAAGTGCCGGTGTGGAACCACGTTGTGGGACCCACAGGTACCCCGAGAAACACGCCTGTGGCTTCGATTTCAAGGCGGTTGGGAGAGAGGAGATAGCTCGGGCGAATCCGGTGATCAAAGGGGAGAAGCTACGGAGGATTTAATCTGCGCCGTTGATTGGATGATGTGA 519 0.5915 MAEEHPCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSSAAATATVASATAVVSSPAAPVESLPQPAVVSAPDACAPLQANRCGACRKRVGLTGFKCRCGTTLWDPQVPRETRLWLRFQGGWERGDSSGESGDQRGEATEDLICAVDWMM* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0533 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Vra3g0533 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 125 - -
Vra3g0533 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 125 - -
Vra3g0533 172 Gene3D - 86 125 IPR035896 -
Vra3g0533 172 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vra3g0533 172 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vra3g0533 172 Gene3D - 1 65 - -
Vra3g0533 172 SUPERFAMILY AN1-like Zinc finger 99 124 IPR035896 -
Vra3g0533 172 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0533 Vra-Chr3 6008261 6009538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0533 1 125 C2H2 Transcription Factor Family AT3G52800 47.328 3.60e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0533 - - gmx:100789686 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0533 3 6008261 6009538 Vra8g0682 8 11998997 12000468 PCT