Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0527 ATGAAGGTCATCGCCGCCTATTTGCTCGCCGTATTGGGAGGCAATGCTGCTCCTTCCGCCGATGACTTGAGGCTTATCCTTGGATCCGTTGGAGCAGACGCAAATGACGACAATATTAGTAACTTCCTGTCCGAAGTCAAGGGCAAAGACCTCGCCGAACTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCAGTGCCTTCCGGCGGTGGCGCTGCCGTTGCCGTGACCGCCGCTCCCGGAGGTGGCGCTTCTGCTCCGGCAGCAGCCGAATCGAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGACGATATGGGCTTCAGTCTTTTTGATTAA 342 0.5556 MKVIAAYLLAVLGGNAAPSADDLRLILGSVGADANDDNISNFLSEVKGKDLAELIAAGREKLASVPSGGGAAVAVTAAPGGGASAPAAAESKKEEKVEEKEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0527 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vra3g0527 113 MobiDBLite consensus disorder prediction 79 113 - -
Vra3g0527 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vra3g0527 113 Gene3D - 1 59 IPR038716 -
Vra3g0527 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
Vra3g0527 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vra3g0527 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0527 Vra-Chr3 5954217 5955134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0527 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 68.142 1.71e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0527 K02943 - gmx:100787024 142.51