Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0521 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTACCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATCTTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTTCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCTGGGTATTGGGGTAGAGGAGCGATGGATCCAGAACCAGGGCGGTGCCGGAGAACTGACGGGAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATAGCAGTGGTGGTGGTGGAACTCTAGGACTAGGTGGTTCATCTTCCATTTCTTCACCTCCGCTAGCTTCTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCCTCTGGCACCAAGAATGAAGACAAGAGCTTGTTTGAAAATGAAGATAATGTGGGTGGGGATGGCAGTGCAGGTGGGCATATGCTGAGGCATTTTTTTGATGATTGGCCAAGATCACTGCCAGACTCTGACAACGTTGAAAACAATGCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCGGATCAACTCTTCCACACGCCTCTCTATTTCTATGCCCGGAAATGCTTCTTCAGATGTCTCTTTGAAATTGTCCACGGGCCCAACAAATGAGAATGTCAATCTCCAGCCGGACCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCGGAGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGGTTCCTGCTTCTGGATCTGAGACCAGCTTCGTTACCACCTGA 1164 0.5009 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLPATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANSSGGGGTLGLGGSSSISSPPLASASLKSPFDLLHLSERSSGTKNEDKSLFENEDNVGGDGSAGGHMLRHFFDDWPRSLPDSDNVENNAAPAPAPAPAPAPARINSSTRLSISMPGNASSDVSLKLSTGPTNENVNLQPDQLQLNWAGGWAGGSQVASMGGPLAEALRSSTSTSSPTSVLHHLVPASGSETSFVTT* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0521 387 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra3g0521 387 PANTHER - 11 387 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vra3g0521 387 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra3g0521 387 MobiDBLite consensus disorder prediction 229 321 - -
Vra3g0521 387 PANTHER GROWTH-REGULATING FACTOR 3 11 387 - -
Vra3g0521 387 MobiDBLite consensus disorder prediction 1 38 - -
Vra3g0521 387 MobiDBLite consensus disorder prediction 24 38 - -
Vra3g0521 387 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0521 387 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra3g0521 387 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Vra3g0521 387 MobiDBLite consensus disorder prediction 295 321 - -
Vra3g0521 387 Pfam WRC 142 184 IPR014977 -
Vra3g0521 387 MobiDBLite consensus disorder prediction 230 245 - -
Vra3g0521 387 MobiDBLite consensus disorder prediction 168 208 - -
Vra3g0521 387 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0521 Vra-Chr3 5874969 5878204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0521 1 374 GRF Transcription Factor Family AT3G52910 50.380 6.24e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vra3g0521 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0521 - - gmx:100814842 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0521 3 5874969 5878204 Vra3g0521 3 5874969 5878204 ECH