Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0517 ATGCGTTCCACCAACAGTACCACATGTGCTGCATCAAGCACCGGAGCCTCTAACGGTAACACAGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGTAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCGGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCCGAACTCAACTTCCCTGACTCCGCCTCTTCTCTTCCCGTTCCTGCTTCATCCGCTGCTCGTGACATTCAGATGGCTGCGGCCAGTGCTGCAGCCGCCGTCGGAGCAGCTAATGATGCACTGAGTGAAGGAAGCCGAGGAGGGAATGTTTCGGTTTCAATGGCACAAGAAGAGTTTTCAGGGGGAAGCTTAAACCACTTTGTCGATGAGGACTTGATCTTTGACATGCCGAATATTCTGGTCAACATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTTCTGCTACAGATTATGACTACATGGATGAAAATCCTAATCTCTGGGGCTTCCCTTACTAG 582 0.5155 MRSTNSTTCAASSTGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPDSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNVSVSMAQEEFSGGSLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFSATDYDYMDENPNLWGFPY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0517 193 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 192 - -
Vra3g0517 193 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g0517 193 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0517 193 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Vra3g0517 193 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Vra3g0517 193 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Vra3g0517 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 7 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0517 Vra-Chr3 5817107 5818221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0517 15 192 AP2-EREBP Transcription Factor Family AT2G36450 62.842 8.41e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra3g0517 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0517 - - gmx:100813781 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0517 3 5817107 5818221 Vra3g0517 3 5817107 5818221 ECH