Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0516 ATGGAAATGGAGGACCATCATCATCATCATCAACATCATCATCATCAACACCATGAACAGCAGCAGCAACAGTATGCCATCACTGATCTAAGGCAACTCATGAACGGCCCGAGGTCCACCCATTTCCCATCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCCACCCGAACCTGGCCGCCTCGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCCGACATAATGCCTCGGTGTCTTCATGACTTTGCATCTACCGATTCCGGCACGAATAATAACAACACGAGCATCGCTGCTGCCACTCCAACCACCACCACTAGTGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAAGAGACACTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGAAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTCTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGTAGACAGGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAACCTCAGTACCAGAAACCAATTTTGGTAGTGGCAGCCTTCGTTTCCACTCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAGAAGCATTGCGATAGCCTAAGTCTCACCAACACCACTGATTTGGACACGTCATCATCGGATGACAACGATCAGAATAGCACTGGGGGACTCAAGGACAACGACTCCACGGAGAAGAGGAGAAAGAGGTTGGGCGGAAGAAGCTGGAAGGTTAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGACAAACTCACGAAGACACTGGAACAGAAAGAAAAGGAGAGGGTGCTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTGAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTACAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTGTAATGGTAACTGGAATTCAGAACCACAATGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACCACCGCTAGAGCTGCTGAAAGCTGGCCAGAATCTGAGATTACTAGGCTTCAGCAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGTTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAGTGGGAAAGTACTAGCAACTACGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACTCAAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCCCTGTATAACCAAGGAGGAGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTACAAAATGATGGTTCTTCGCCTTCAAATTCAAATGTTGGAAATGCAGTTGCTGGTGATCATTGCTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAGTAAAGCGAGTCAAAACCAGTGA 1773 0.4636 MEMEDHHHHHQHHHHQHHEQQQQQYAITDLRQLMNGPRSTHFPSMPPQPKAELFPGGHPNLAASQHFEMMMFGRQVADIMPRCLHDFASTDSGTNNNNTSIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSGSLRFHSNSHNPSQTNQEMFHSQKHCDSLSLTNTTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLGGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGVMVTGIQNHNENLNEDGSEILNSTTARAAESWPESEITRLQQLRAEMETRYMQSGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDHCFPFLMTESANLWENYSLKVSKASQNQ* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0516 590 MobiDBLite consensus disorder prediction 90 117 - -
Vra3g0516 590 MobiDBLite consensus disorder prediction 1 24 - -
Vra3g0516 590 Coils Coil 326 353 - -
Vra3g0516 590 CDD GT1 436 500 - -
Vra3g0516 590 ProSiteProfiles Myb-like domain profile. 129 194 IPR001005 -
Vra3g0516 590 Pfam Myb/SANT-like DNA-binding domain 435 518 IPR044822 -
Vra3g0516 590 Pfam Myb/SANT-like DNA-binding domain 136 222 IPR044822 -
Vra3g0516 590 MobiDBLite consensus disorder prediction 226 293 - -
Vra3g0516 590 CDD GT1 136 201 - -
Vra3g0516 590 MobiDBLite consensus disorder prediction 226 305 - -
Vra3g0516 590 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 34 581 - -
Vra3g0516 590 Gene3D - 137 199 - -
Vra3g0516 590 Gene3D - 436 498 - -
Vra3g0516 590 PANTHER - 34 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0516 Vra-Chr3 5796504 5799916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0516 19 585 Trihelix Transcription Factor Family AT5G03680 44.901 2.21e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra3g0516 Myb_DNA-bind_4 6.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0516 - - gmx:100813245 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0516 3 5796504 5799916 Vra3g0516 3 5796504 5799916 ECH
Vra3g0516 3 5796504 5799916 Vra8g0792 8 15687828 15691672 PCT