Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0512 ATGAATATGGAGAGTACGCGCAGATCGTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGAAGAACTAAGCGCCCGACAGTTACCTCAAAGACAGCAAGGGTCGGGGATAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGCCGCGGCGGTGGGTACCAGCCTCAGCCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTTGCTGAACTTACTTTCAATTCTAAGCCAATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTCTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCCGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGTCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAACTTTGTTAAAGTCGAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCGGGTGCTGCAAGGACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGACGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGGGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTCAGCCGGGCTTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGAACGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACACTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTGACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCAGCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTGATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCTCAAAACATCTCAATTTTTAGGAGGTCCAACTAGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAAACAAAGCTTCAGCCACAACAGCTCAACTCTTCTCAGGCTGAAGTTTTTGCTAAAACTAAGTTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCCGGTAGGTCTTCTCCTGCCACATTAATTTCTTCAGGGTCTGCAGTGATATCACCATCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTGCCCAAAAAACCTCAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAATGTGAATGCCGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCCGCAGAAACTGAATCACCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGTAAACATTAGCACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGACGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAACAACAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAAGAATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACCACTCCGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTGCTCGGATTTCAATGATGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCAAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGGTAATGATTAA 3069 0.4337 MNMESTRRSLDRSRELGSKKPRLIEELSARQLPQRQQGSGIVTSLVSARARVNDRDTESSESSRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGTLLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAARTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLNDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSASQRQSPSLPGTVYHPDSMQNLPEQEMPQDLKTSQFLGGPTSQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQTKLQPQQLNSSQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLISSGSAVISPSLLDPLHKDSSSLPKKPQGKAGQPPQRLSTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTVNISTSSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFPHHCKICGIRFKQEQQYKRHLEWHATREHGPIKESRSWYAKSSDWIAGKVEYSSELEFTDHSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCSDFNDEMESRNVGPIIHAKCLSENSIVTNLGND* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0512 1022 MobiDBLite consensus disorder prediction 802 839 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 579 595 - -
Vra3g0512 1022 Pfam CID domain 83 192 IPR006569 -
Vra3g0512 1022 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1017 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 1 74 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 738 756 - -
Vra3g0512 1022 Gene3D - 69 199 IPR008942 -
Vra3g0512 1022 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1017 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vra3g0512 1022 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Vra3g0512 1022 CDD CID_Pcf11 79 189 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 676 756 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 802 818 - -
Vra3g0512 1022 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Vra3g0512 1022 ProSitePatterns Zinc finger C2H2 type domain signature. 877 897 IPR013087 -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 30 46 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 535 570 - -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 693 714 - -
Vra3g0512 1022 ProSiteProfiles Zinc finger C2H2 type domain profile. 875 902 IPR013087 -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 1 26 - -
Vra3g0512 1022 SMART 558neu5 77 199 IPR006569 -
Vra3g0512 1022 MobiDBLite consensus disorder prediction 579 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0512 Vra-Chr3 5760079 5766218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0512 49 236 C2H2 Transcription Factor Family AT4G04885 54.787 2.98e-54 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0512 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0512 K14400 - gmx:100788958 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0512 3 5760079 5766218 Vra3g0512 3 5760079 5766218 ECH
Vra3g0512 3 5760079 5766218 Vra8g0787 8 15499423 15506420 PCT