Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0511 ATGAACCCAAGACAACAAAGTCATCCTCAACTCGTACCAGAGGGACCAATTGCCTTCTCCACCACTCTCCTGCGTTCTCATGAAGCATTCCCATCGTGCTCTTTTCCTCGTCACATTTCAGCTTCTCTTCCACCACCCGACATTACTCTTTCTGCCTCTCTTCCTTCCTCTTCCTCTCAACCACACTCTTCCACTCCCTCTCCTTCTTCCAAGTTGCCTTCATCAACAGCAGAGTTTGAGAAGGTAATTACTTTGCCGCATCCACTTGAATGTTTACAAGGGAATCCGGTTCCAGCATTCCTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCATATCATGGTCCTCCGCTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCCAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAATGAAGCTTTTCGGCGAGGGAAGAGATATCTTCTGAAGAACATCCAAAGGCGCAGACATCCTCATCCCCATCAAGTTGGTAGGCATATCGTGCATTGGTCTGATGCAGGTAAGGCTGGGCTTGAATTTGATATAGAAAGACTAGGGAAGGAGAAGAGTGTGTTAATGCAAGAGGTAGTTGAGTTGCGGCAACTGCAAAGAACAACACTTCACCGTGCTAGACAAGTGAATCGGAGGCTCCAATCTGCAGAGGTGATACACAAACAAATGCTTTCTTTCCTGGCAAGGTTACTTGAAAACCCTGCATTGTTAACATGCCTTCAGCATGGGAAAGAACAAAGAGATGTAGAATCTCCTAAAGTGAGAAGGAGGTTTGTCAAGCAGCACCAAGAACGAACAAGAGTATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTTACCAACCTGATTGGAGAAATGTAACCATCTCTTCCAAAATACCAGAAATGTGTCCAACTTCCCTGGTAGGGTGTTCAAATTATCTTTCACGGGATTTGGCCAAAGAATTGAGTGAAGGTGGTGAGAATCTGGTGTCAGATGGATTGGCCCCCGTGCACGAGGTTATGCCAACTTCTGACACCATTGGTTTAAAGTCATCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGAAAAAATGTCATGAGCACAAATCAAGAAGATCTTCTTGCAGAGGAGATTGTTTCTTTCCCAGAGGATTTGACTAGTGAGGCTGGATTTCCAGAGTTTTCACCTCTAGTTGGAACAGAAAGCATTATCAAGCCAGAAGATAAATGGAAGACCAGATTTCATTTCAGCGGCGCTCCTACAAGCTCTACGGATTCACCAGCTACCAACCATGAAGGACAAGAATTTAGATTCACAAGTGGTATGTCAGACACGTGGGATATTTGTTCTCTGTGGGCAACACAAAGTTTCCGAACTGATGATCCAGCACTGGATGAATGA 1500 0.444 MNPRQQSHPQLVPEGPIAFSTTLLRSHEAFPSCSFPRHISASLPPPDITLSASLPSSSSQPHSSTPSPSSKLPSSTAEFEKVITLPHPLECLQGNPVPAFLSKTFDLVDDPSLDPIISWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYGFRKIDSDKWEFFNEAFRRGKRYLLKNIQRRRHPHPHQVGRHIVHWSDAGKAGLEFDIERLGKEKSVLMQEVVELRQLQRTTLHRARQVNRRLQSAEVIHKQMLSFLARLLENPALLTCLQHGKEQRDVESPKVRRRFVKQHQERTRVSDFLKEGQIVSYQPDWRNVTISSKIPEMCPTSLVGCSNYLSRDLAKELSEGGENLVSDGLAPVHEVMPTSDTIGLKSSSFGLEDTLLKGKNVMSTNQEDLLAEEIVSFPEDLTSEAGFPEFSPLVGTESIIKPEDKWKTRFHFSGAPTSSTDSPATNHEGQEFRFTSGMSDTWDICSLWATQSFRTDDPALDE* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0511 499 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 87 494 IPR027725 -
Vra3g0511 499 Coils Coil 216 236 - -
Vra3g0511 499 Gene3D - 93 190 IPR036388 -
Vra3g0511 499 Pfam HSF-type DNA-binding 100 189 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 SMART hsfneu3 96 189 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 MobiDBLite consensus disorder prediction 46 74 - -
Vra3g0511 499 ProSitePatterns HSF-type DNA-binding domain signature. 139 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 87 494 - -
Vra3g0511 499 PRINTS Heat shock factor (HSF) domain signature 100 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 PRINTS Heat shock factor (HSF) domain signature 138 150 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 PRINTS Heat shock factor (HSF) domain signature 151 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra3g0511 499 SUPERFAMILY "Winged helix" DNA-binding domain 95 189 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0511 Vra-Chr3 5753231 5755916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0511 85 321 HSF AT5G03720 55.000 2.05e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra3g0511 HSF_DNA-bind 9.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0511 K09419 - gmx:100788429 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0511 3 5753231 5755916 Vra3g0511 3 5753231 5755916 ECH