Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0510 ATGGAAATGCCTGCCAGAAGATCCAGCAGCTACTCTCTCCTCAACCAAACCCCAGATGACAACTTAAGCGTTCCATTATTCGACTCTTCCTCCGGCGACAGTAAAAACAACAGGAGCAAGTTGGAGAGAGTCTCAAATTGGGACTCTGTCGTCGATCACAGGCAAGGGAACAGGATCGGGAATTTGTACTGCTCTTTTGGGTTCGGGATGCAGCGGCAGTCAAGTGAGAGCAGTTTTGGTGAGAGCTCACTCTCCGGCGAGTTTTACGCTCCCACTATGTTCACTGTAACACCTGATGATACAGACAAATTCACACTTGGAGAGGTTAGAGGCAGGATTTCGGACGCCGGGCCAGCGAGGAGCGGCGGGTCCTTTGGCAAGAGCTGGGCGCAGCAGACTGAAGAGAGTTATCAGTTACAGTTGGCATTGGCTCTTAGACTTTACTCGGAGGCCACATGTGCTGATGATCCCAATTTTCTGGATCCCGAACCCCATGAATCCTCTTCAAGGTCATCGGGTTCTGCAGAGACAGTTTCCCATAGATTCTGGGTAAATGGCTGCCTACTGTACTTCGACAAAATTCCTGATGGCTTTTATTTAATTCATGGAATGGATCCCTATTTATGGACCGTGTGCACTGATCTACAGGAAAATGGCCGAATTCCTTCAATAGAGACACTAAAATCTATAGATCCTTCGACCGTTTCTTCACTTGAAGTAATTTTGGTGGATAGACAGCGTGATCCTATCTTAAAAGAATTGCAGAACAAGGTACATGACATTTTTTGTCGCAGCAAAGTAACAACAGATGTTGTAGACCAGCTTGCAAAGCTTGTATTCGATTGTATGGGGGGTTCAGCTTCTGTATGGGAAGGCGATCTTTTTCCCGTATGGAGGGAGTGCATTAATGATCTAAGAGATCGCATAGGATCTGTTGTTGTTCCAATTGGCAGCTTATCTACTGGACTTTGCAGGCATCGTGCTGTACTATTCAAAGTGCTAGCTGACACCATTGGTTTACCGTGTCGAATTGCAAAGGGTTGTAAATATTGTTCAAGAGAAGATGCCTCTTCATGCCTTGTTCGGTTTGGGCTTGACAGGGAGTATATGGTTGATCTAATTGGAAAGCCTGGTTACTTATGTGAGCCCGATTCCTTGCTGAACGGTCCATCCTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAAGACTCAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCGGATAGTCTGCCTAGTGAGATTGTCTTCGATAGTGGTGTTGCAGATTTTGGATTCTCCTTTCCAGAACAGTATGAAAGGCAGTACAGGGACAGGGACCCTGGACCAATTTCAAATGATAACAATAAAAGTTCTCTTGTTCCTGCACAACCACAAGCTTATCGTCCAAGTGAACATGATCGAGGCTCCGAAACATTTAAATCAGCTAACCCTCCACAGAATGTTGTTGGGCCGCCACTGACAAGCAAGGATTCATTGCTCTTAAAGCATAATCGTCCTGGTCATAGAGATACACAGACCCGATTAATGATTTCTAGCAAACCATCTAGAGAGTTTTCCATAGATATGGAGGATCTGGACATCCCATGGACTGATCTTGTTTTGAAAGGGAGAATAGGATCAGGTTCTTTTGGAACTGTACATCAAGCTGAGTGGAATGGCTCGGAGGTTGCTGTAAAAATTTTGATGGAACAAGACTTTGCAGGTGAACGCTTCCAGGAATTCTTGAGGGAGGTTGCAATAATGAAAAGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCCAATTTATCAATTGTCACAGAATACTTGTCCAGGGGTAGCTTGTACAGGCTGTTGCATAAACCTGGTGCCACAGAAATGTTGGATGAGAGACGTAGGATAAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCACAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTAGTGATTTTGGGCTTTCCCGACTAAAGGCAAACACATTTCTCTCATCCAAGTCAGCTGCTGGGACACCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAAAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTTGCAACACTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAAATACCACGAGATTTAAATCCTCAAATAGCATCAATAATTGAGGCTTGCTGGGCCAACGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGGATTGATCAAACCCCCTGTACCTCAACCTGGTCGTCCAAACATGTCGTTACTCATTTGA 2466 0.4469 MEMPARRSSSYSLLNQTPDDNLSVPLFDSSSGDSKNNRSKLERVSNWDSVVDHRQGNRIGNLYCSFGFGMQRQSSESSFGESSLSGEFYAPTMFTVTPDDTDKFTLGEVRGRISDAGPARSGGSFGKSWAQQTEESYQLQLALALRLYSEATCADDPNFLDPEPHESSSRSSGSAETVSHRFWVNGCLLYFDKIPDGFYLIHGMDPYLWTVCTDLQENGRIPSIETLKSIDPSTVSSLEVILVDRQRDPILKELQNKVHDIFCRSKVTTDVVDQLAKLVFDCMGGSASVWEGDLFPVWRECINDLRDRIGSVVVPIGSLSTGLCRHRAVLFKVLADTIGLPCRIAKGCKYCSREDASSCLVRFGLDREYMVDLIGKPGYLCEPDSLLNGPSSISFSSPLRFPRLKPAEPTIDFRSLAKQYFSDSLPSEIVFDSGVADFGFSFPEQYERQYRDRDPGPISNDNNKSSLVPAQPQAYRPSEHDRGSETFKSANPPQNVVGPPLTSKDSLLLKHNRPGHRDTQTRLMISSKPSREFSIDMEDLDIPWTDLVLKGRIGSGSFGTVHQAEWNGSEVAVKILMEQDFAGERFQEFLREVAIMKSLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRISMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVSDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQIASIIEACWANEPWKRPSFSSIMDSLKGLIKPPVPQPGRPNMSLLI* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0510 821 MobiDBLite consensus disorder prediction 487 501 - -
Vra3g0510 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Vra3g0510 821 SMART serkin_6 547 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0510 821 Pfam Protein tyrosine and serine/threonine kinase 548 801 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 Gene3D Phosphorylase Kinase; domain 1 540 625 - -
Vra3g0510 821 SUPERFAMILY Protein kinase-like (PK-like) 523 800 IPR011009 -
Vra3g0510 821 ProSitePatterns Protein kinases ATP-binding region signature. 553 574 IPR017441 GO:0005524
Vra3g0510 821 Gene3D Transferase(Phosphotransferase) domain 1 626 810 - -
Vra3g0510 821 MobiDBLite consensus disorder prediction 22 42 - -
Vra3g0510 821 ProSiteProfiles Protein kinase domain profile. 547 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0510 821 PRINTS Tyrosine kinase catalytic domain signature 621 634 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 PRINTS Tyrosine kinase catalytic domain signature 662 680 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 PRINTS Tyrosine kinase catalytic domain signature 709 719 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 PRINTS Tyrosine kinase catalytic domain signature 772 794 IPR001245 GO:0004672|GO:0006468
Vra3g0510 821 Pfam Ethylene-responsive protein kinase Le-CTR1 175 381 - -
Vra3g0510 821 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 117 810 - -
Vra3g0510 821 CDD STKc_MAP3K-like 553 801 - -
Vra3g0510 821 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 117 810 - -
Vra3g0510 821 MobiDBLite consensus disorder prediction 450 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0510 Vra-Chr3 5732677 5752589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0510 1 817 MAP Kinase Kinase Kinase AT5G03730 63.232 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra3g0510 PK_Tyr_Ser-Thr 3.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0510 K14510 - gmx:100810555 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0510 3 5732677 5752589 Vra3g0510 3 5732677 5752589 ECH
Vra3g0510 3 5732677 5752589 Vra8g0784 8 15462352 15471208 PCT