Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0507 ATGTATTCCCATCACATCCTTGAAACTGTTCGACTTTTTCTGGAAACATTTTTTCTTCCCTGGACTGTCTCTGCAACAATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCAGGAGACGACAAGATTATACACCTTTCAAATGCATGCCTGGGGGATGTGACTAAGGCTAAAGGAGAATCGGTGGCCCTGTATGTGAAGTTTGGTAACCAGAAGCTTGTGCTTGGAACGCTTTCTTCTGATAAATTTCCTCAAGTATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCCCATAGCTGGAAAAATGGGAGTATCTTCTTTACTGGATTTAAAGCTCAATCTCAGTCGGAGTCGGATAATGATGAAGATTCTGAAGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGGAAACCCGAGTTTGAGGTGAAGCATGGTGTCAAACCTGATGAAGCTAAACAGAAAAAGACAGCAGATCCAAAGAAAAATGAGAAGGCTAAGGAAAAGGATGCAAACGGTGAAGATGAAGATTCATCTGAATCTGATTCTGACGATGATTCAAGTGAAGATAAGCCCACAGCAAATGGTGACATAGAAAGTAGTGAAGGTGATGAGGATAGCGATGAAGAGGATGAGGATGATGACAAGGATGAGGATGAGGATGACGATGATGATGAATCTGATGAGGAGACTCCCAAGAAGATTGAAGCAGGCAAGAAGCGGAATATTGACTCTGCCAAGAAAACAACTGTCCCTGTGAAGAAGACAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTTGCAACGCCTTACCCTTCTAAGCAGGCTGGAAAAGCAATTGCAGATAACAAGCGACAGACTCCGAAGTCAGGGGGAGATTACAGCTGCAAGCCTTGCAGCAGGTCATTTAAGACAGAAGATGCCTTAAACTCTCATAATAGGGCGAAGCACAGTGCTAAGTAA 1005 0.4229 MYSHHILETVRLFLETFFLPWTVSATMEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKAKGESVALYVKFGNQKLVLGTLSSDKFPQVSYDLIFEKEFELSHSWKNGSIFFTGFKAQSQSESDNDEDSEDFDEDIPVSAANGKPEFEVKHGVKPDEAKQKKTADPKKNEKAKEKDANGEDEDSSESDSDDDSSEDKPTANGDIESSEGDEDSDEEDEDDDKDEDEDDDDDESDEETPKKIEAGKKRNIDSAKKTTVPVKKTKFVTPQKTDSKNVVHVATPYPSKQAGKAIADNKRQTPKSGGDYSCKPCSRSFKTEDALNSHNRAKHSAK* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0507 334 MobiDBLite consensus disorder prediction 150 183 - -
Vra3g0507 334 Pfam C2H2-type zinc finger 308 332 - -
Vra3g0507 334 ProSitePatterns Zinc finger C2H2 type domain signature. 310 331 IPR013087 -
Vra3g0507 334 MobiDBLite consensus disorder prediction 264 282 - -
Vra3g0507 334 MobiDBLite consensus disorder prediction 240 260 - -
Vra3g0507 334 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 27 330 - -
Vra3g0507 334 MobiDBLite consensus disorder prediction 208 239 - -
Vra3g0507 334 Pfam Nucleoplasmin-like domain 29 118 IPR041232 -
Vra3g0507 334 Gene3D Nucleoplasmin core domain 23 125 - -
Vra3g0507 334 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 27 330 - -
Vra3g0507 334 MobiDBLite consensus disorder prediction 121 334 - -
Vra3g0507 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 334 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0507 Vra-Chr3 5686353 5693181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0507 27 333 C2H2 Transcription Factor Family AT5G03740 38.125 3.12e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0507 NPL 1.1e-10 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0507 3 5686353 5693181 Vra3g0507 3 5686353 5693181 ECH