Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0497 ATGGCGTTGACTTCAGAATATTTTTCACTCTTTCTCCTCCTACTCCTGTCTGTTCTGTTTATCTTCCTCCTCCGTCGCAAAACCGCAGCAAGAAACCGCCGTCTTCCGCCAGGACCACCGGGATGGCCCATATTCGGAAACATGTTTCAGCTCGGAGACATGCCTCACCGCACCCTCACCGAACTAAGGGCCAAACACGGCCCCGTTTTGTGGCTCCAAATCGGAGCCATGAAAACCATGGTTATTCTCTCAGCCGAAGCCGCCGCCGTGTTCTTCAAGCATCACGACCACGCCTTCGCAGACCGCACCATAACCGAAACCATGCGCGTCCACAACTACAACAAATCCTCCTTGGCCTTAGCCCCTTACGGCCCCTACTGGCGCCTCATGCGGCGCCTCGTCACCGTGGACATGCTGGTTGCGAAACGCATAAACGAAACCGCTCCAGTGCGGCGGAAGTGCGTAAACGACATGATAACATGGTTGACCAAAGAGGCTGAGAAGGTGAAAGAGGGTGATGGAGTCCACGTGGCGCGGTTCGTGTTCCTGATGTCGTTCAACCTCTTAGGGAACCTGATGCTGTCGCGGGACCTTTTCGACCCTGACTCGGAAGACGGGTCTGAGTTTTTTGCTGCGATGATGGGTTTGATGGAGTGGTCAGGGCACGCTAACGTCGCCGACATGTTCCCGTGGTTGAGGCGGCTGGACCCGCAAGGTTTGAGGAGGAAGATGAATCGAGACATGAGCAAAGCTCTGGAAATCGCGTCGAAGTTCGTGAAACAGCGTTTGGAAGATAAAAAAACAAGGGACTTCTTAGATGTGTTGATTGACTTTCAAAGCAGCAACAGTGAAGAAGCACTCAAAATAACAGACAAAGACCTCAACATTTTCATTTTGGAAATATTCTTGGCTGGGTCAGAAACAACAAGCAGCACAATTGAATGGACGATGATGGAGCTTCTGCGCAACCCGGAGTGGCTGGAGAAGGTGAAAAGCGAGCTTGATCGGGTGGTTGGGCGTGAAAGAAAGTTTGAAGAGAGTGACATAGACAACCTTCCTTACCTACAAGCCGTGATTAAGGAAACACTTCGATTGCACCCTCCCATTCCGTTTCTTGTTCCTCGGAAGGCTATCGAGAACACAAAGTTCATGGGATACGACATTCCGAAAGACACCCAGGTTTTGGTGAATGCCTGGGCAATAGGGAGAGACCCGAGTGTCTGGGAGCAACCCCTTGAGTTCAAACCCCAACGGTTTGTCGATGATTGCAAGAACATTGATTACAAGGGAACTAATTTTGGGTTGATTCCTTTCGGAAGTGGACGAAGAATGTGTGCAGGTGTGCCCCTAGCGCACAGAATTCTTCATCTTGTGTTGGGATCATTGCTTCACGAATTTGACTGGAAACTTGAGAGTCATGTCACACCCTCCACCTTGGATACCAGGGAAAGGCTCGGTATCACCATGCGAAAGCTTCAACCTTTGCTTGCTGTGCCTAAATTAATTTCCTCTTCCTCTTCCACCATTAATCATTAA 1536 0.5026 MALTSEYFSLFLLLLLSVLFIFLLRRKTAARNRRLPPGPPGWPIFGNMFQLGDMPHRTLTELRAKHGPVLWLQIGAMKTMVILSAEAAAVFFKHHDHAFADRTITETMRVHNYNKSSLALAPYGPYWRLMRRLVTVDMLVAKRINETAPVRRKCVNDMITWLTKEAEKVKEGDGVHVARFVFLMSFNLLGNLMLSRDLFDPDSEDGSEFFAAMMGLMEWSGHANVADMFPWLRRLDPQGLRRKMNRDMSKALEIASKFVKQRLEDKKTRDFLDVLIDFQSSNSEEALKITDKDLNIFILEIFLAGSETTSSTIEWTMMELLRNPEWLEKVKSELDRVVGRERKFEESDIDNLPYLQAVIKETLRLHPPIPFLVPRKAIENTKFMGYDIPKDTQVLVNAWAIGRDPSVWEQPLEFKPQRFVDDCKNIDYKGTNFGLIPFGSGRRMCAGVPLAHRILHLVLGSLLHEFDWKLESHVTPSTLDTRERLGITMRKLQPLLAVPKLISSSSSTINH* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0497 511 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 Gene3D Cytochrome P450 21 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 SUPERFAMILY Cytochrome P450 36 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PANTHER CYTOCHROME P450 FAMILY PROTEIN 8 502 - -
Vra3g0497 511 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 8 502 - -
Vra3g0497 511 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 Pfam Cytochrome P450 36 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra3g0497 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0497 Vra-Chr3 5613874 5615662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0497 3 499 Cytochrome P450 AT3G52970 45.681 7.13e-155 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0497 K22983 - gmx:100785241 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0497 3 5613874 5615662 Vra3g0497 3 5613874 5615662 ECH