Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0495 ATGGAATTCAATGGAAAGAGAGACCTAGCCCTAAAGCTGTATAAAGATATGGATTGGCATTACACCACAAAACCATTTCTTCCTCACCCAGACACCTTAAGCTTCTTCTACAACTACAACAACAACCCTTGTCCAGGAGTGGAAGTGAAACAAGCGACATTGTTGGAGAGAGGAGAAGGTTCTATTCCGGCAATGTACAACGGAAGCAAAGAGAAGAAGAAGCGGTTAACAAGCAACCAGTTAGAAATATTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTAGACCCTGAAAAGAAGATGAAACTTTCGAGGGAGCTAGGCCTTCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACGAGGTGGAAAACCAAGCAGCTTGAGCACTTATACGATGCTCTCAAGCACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATGCTAAGTAAAGAGCAAGGTTTTGGGAAGCAAAGATTGGGAGGTTATCCAGAAATATCAGGAGTAGAAACAGTAGAAAGCACTTCAGAGGGTCTAAGGGGTTCCAACAAGGCACAGGGAAAGAGTAACATTGAGCAGGTCGCAGATGAGGGCTTTTGCTCTTTCAGCGTGGAGGATTATAACACTGTTTCAGTGCCTTTCTGCCAGTGGCCTGTTGTGCCTTATTAG 705 0.444 MEFNGKRDLALKLYKDMDWHYTTKPFLPHPDTLSFFYNYNNNPCPGVEVKQATLLERGEGSIPAMYNGSKEKKKRLTSNQLEILERSFQEEIKLDPEKKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDALKHQYDVISNEKQKLQEEVVKLKAMLSKEQGFGKQRLGGYPEISGVETVESTSEGLRGSNKAQGKSNIEQVADEGFCSFSVEDYNTVSVPFCQWPVVPY* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0495 234 Gene3D - 65 134 - -
Vra3g0495 234 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 17 231 - -
Vra3g0495 234 SUPERFAMILY Homeodomain-like 61 129 IPR009057 -
Vra3g0495 234 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Vra3g0495 234 Coils Coil 133 160 - -
Vra3g0495 234 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Vra3g0495 234 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Vra3g0495 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 231 IPR045224 GO:0003700
Vra3g0495 234 SMART HOX_1 69 131 IPR001356 GO:0003677
Vra3g0495 234 CDD homeodomain 70 128 IPR001356 GO:0003677
Vra3g0495 234 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0495 Vra-Chr3 5593530 5595369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0495 21 171 Homeobox Transcription Factor Family AT2G36610 44.318 1.99e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra3g0495 Homeodomain 5.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0495 - - vra:106757543 482.641