Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0494 ATGAAACACCCTTCTTCCATAAACCTGTCACTGCCATTGTTGCCATTGGCATTGGCCTTCACCATCTTCTGTGTTGCAGAGACTGCATGGCAAAATGATACACTCGCCCTTACCCAATTCCGCCTCCAAACCGACACCCACGGCAATCTTCTCTCCAACTGGACCGGAGCCGACGCCTGCTCCGCCGCGTGGCTCGGCGTCGAGTGCTCCCCAAACGGCAGAGTGGTGGGCCTCTCCCTCCCTTCCCTCAACCTCCGTGGTCCAATTGATTCTCTCTCCTCACTAGTGTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCCTTTACCCCCTCTTAAACTGCACCTCCCTCGAACTCCTCTATCTCTCCCACAATGACTTCTCCGGCGAGATTCCGCGGCAGATATCCTCCCTCCGCCTCCTTCTCCGCCTTGACATCTCCGACAACAACATCCGCGGCCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTTCTCACTCTTCGGTTGCAGAACAACGCCCTCTCTGGCCACGTCCCCGACATCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCCATGCTTTCAAAATTCGGCAACGCTAGCTTCTCCGGAAACCACGCTTTATGTGGGTCCAATCCGTTGCCCAAATGTTCCGAAATCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGCTCGTTCCCTCAAACAAGCAGTGTGACTCTCTCTGACACTCCGAAGAAGAAAGGTCTGAGGGCGGGTGTCATTGTGGCCATTGTGGTGGCGGTTTGCGTGGCGGTGCTGGTGGTGATTTCATTCGTGGTGGCGCACTGCTGCGCGAGGGGAGGGGGAGGCTATGGGTCGGCGGTGGGGAGCGAGAGTGGGAAAAGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTGTATGGAAATGGTGGGAATTTCGATAGAGATAGCGATGGGACGAACACTGAGACGGAACGTAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCGGAGATGCTGGGAAAAGGGTGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGCTGCACCGTCGCAGTGAAGAGACTGAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTCAAACACCCCAACATTGTCAGACTCCGAGCCTATTACTATGCCAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCCAATGGAAGCTTGCATGCTCTTCTTCATGGTAACCGTGGACCTGGAAGGATTCCATTGGATTGGACAACGAGAATAAGCTTGGTGTTAGGTGCGGCCAGAGGGTTGGCTAGGATTCATGCAGAGTACAACGCGTCCAAGATACCCCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGCGTCGCATTGATTTCCGACTTCGGGTTATCGCTGCTGTTGAATCCGGCTCACGCGATCGCGCGGTTGGGAGGGTACAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTATTGGAGGTGTTGACTGGAAGGGCGCCGTCGACTCAGTACCCTAGTTCCGCGGCGCGTCCACGCGTGGAGGATGAGGGTGAGGTGGATCTTCCGAAGTGGGTTCGTTCGGTGGTGAAGGAGGAATGGACCGCTGAGGTGTTCGACGAGGAGCTGTTGCGGTACAAGAACATCGAGGAGGAGCTGGTGGCGATGTTGCACGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGATGGAAGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCTCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCGCCGTCGCTCCCCACCACCGAAGATGGCCTTGCTTAA 2049 0.553 MKHPSSINLSLPLLPLALAFTIFCVAETAWQNDTLALTQFRLQTDTHGNLLSNWTGADACSAAWLGVECSPNGRVVGLSLPSLNLRGPIDSLSSLVYLRFLDLHENRLNGTLYPLLNCTSLELLYLSHNDFSGEIPRQISSLRLLLRLDISDNNIRGPIPNQVAKLTHLLTLRLQNNALSGHVPDISASLLNLTQLNVTNNELRGHVPDSMLSKFGNASFSGNHALCGSNPLPKCSEIEPDTETTITVPSKPSSFPQTSSVTLSDTPKKKGLRAGVIVAIVVAVCVAVLVVISFVVAHCCARGGGGYGSAVGSESGKRKSGSSSGSEKKVYGNGGNFDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPAHAIARLGGYRAPEQVEVKRLSQEADVYAFGVLVLEVLTGRAPSTQYPSSAARPRVEDEGEVDLPKWVRSVVKEEWTAEVFDEELLRYKNIEEELVAMLHVGVACVAAQPEKRPSMMEVVKMVEDLRVEQSPLGEDYDEARSRNSLSPSLPTTEDGLA* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0494 682 ProSiteProfiles Protein kinase domain profile. 369 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0494 682 MobiDBLite consensus disorder prediction 306 345 - -
Vra3g0494 682 Gene3D Ribonuclease Inhibitor 112 237 IPR032675 -
Vra3g0494 682 MobiDBLite consensus disorder prediction 655 682 - -
Vra3g0494 682 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vra3g0494 682 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Vra3g0494 682 Pfam Protein kinase domain 373 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0494 682 SUPERFAMILY Protein kinase-like (PK-like) 373 647 IPR011009 -
Vra3g0494 682 PANTHER LRR RECEPTOR-LIKE KINASE 13 672 - -
Vra3g0494 682 SUPERFAMILY L domain-like 31 213 - -
Vra3g0494 682 Gene3D Transferase(Phosphotransferase) domain 1 445 668 - -
Vra3g0494 682 MobiDBLite consensus disorder prediction 244 267 - -
Vra3g0494 682 MobiDBLite consensus disorder prediction 315 330 - -
Vra3g0494 682 Gene3D Ribonuclease Inhibitor 27 111 IPR032675 -
Vra3g0494 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 672 - -
Vra3g0494 682 MobiDBLite consensus disorder prediction 244 266 - -
Vra3g0494 682 CDD STKc_IRAK 375 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0494 Vra-Chr3 5587306 5589823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0494 28 678 Receptor kinase-like Gene Family AT2G36570 66.117 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra3g0494 Pkinase 2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0494 - - gmx:100808402 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0494 3 5587306 5589823 Vra3g0494 3 5587306 5589823 ECH