Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0490 ATGGATTGGCATTACACCACAAAACCATTTCTTCCTCACCCAGACACCTTAAGCTTCTTCTACAACTACAACAACAACAACCCTTATCCAGGAGTGGAAGTGAAACAGGCGACATTGTTGGAGACAGGAGAAGGTTCTATTCCGGCAATGTACAACGGAAGCAAAGAGAAGAAGAAGCGGTTAACAAGCAACCAGTTAGAGTTATTGGAGAGGAGCTTCCAGGAGGAGATAAAGTTAGACCCTGAAAGGAAGATGAAACTTTCGAGGGAGCTAGGCCTTCAGCCTCGTCAAATCGCTGTTTGGTTCCAAAATAGACGTACGAGGTGGAAAACCAAGCAGCTTGAGCACTTATACGATGTTCTCAAGCACCAATATGATGTCATCTCCAACGAAAAGCAAATGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATGCTAAGTAAAGAGGAAGGTTTTGGGAAGCAAAGATTGGGTGGTTATGAAGAAATATCAGGAATAGAAACGGTAGAAAGCACTTCAGAGGGTCTAAGGGGTTCGAACAAGGCACAGGGAAAGAGTAACATTGAGCAGGTCGCAGATGAGGGTTTTTGCTCTTTCAGCGTGGAGGATTATAACACTGTTTCAGTGCCTTTCTGCCAGTGGCCTGTTATGCCTTATTAG 660 0.4439 MDWHYTTKPFLPHPDTLSFFYNYNNNNPYPGVEVKQATLLETGEGSIPAMYNGSKEKKKRLTSNQLELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQMLQEEVVKLKAMLSKEEGFGKQRLGGYEEISGIETVESTSEGLRGSNKAQGKSNIEQVADEGFCSFSVEDYNTVSVPFCQWPVMPY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0490 219 SUPERFAMILY Homeodomain-like 47 116 IPR009057 -
Vra3g0490 219 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Vra3g0490 219 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vra3g0490 219 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vra3g0490 219 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vra3g0490 219 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Vra3g0490 219 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 216 - -
Vra3g0490 219 Coils Coil 118 145 - -
Vra3g0490 219 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vra3g0490 219 Gene3D - 50 118 - -
Vra3g0490 219 SMART HOX_1 54 116 IPR001356 GO:0003677
Vra3g0490 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 216 IPR045224 GO:0003700
Vra3g0490 219 CDD homeodomain 55 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0490 Vra-Chr3 5552449 5554560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0490 5 156 Homeobox Transcription Factor Family AT2G36610 44.886 4.28e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra3g0490 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0490 - - vra:106757543 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0490 3 5552449 5554560 Vra3g0490 3 5552449 5554560 ECH