Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0489 ATGGTCCTCAAAACTGAACTATGCAGATTCAGTGGTGCCAAGATTTACCCAGGAAAAGGCATTAGATTTGTTCGCGGTGATTCTCAGGTTTTCCTCTTTGCCAATTCCAAATGCAAGAGGTATTTCCACAACCGCTTGAAGCCATCAAAGCTTACCTGGACTGCAATGTACAGGAAGCAACACAAGAAGGACATTGCTCAAGAAGCTGTGAAGAAGAGAAGACGTGCTGCCAAGAAGCCTTACTCTAGGTCCATTGTCGGTGCCACTTTGGAAGTTATCCAGAAGAAGAGAACTGAGAAGCCAGAAGTTAGAGACGCAGCTAGGGAAGCTGCCCTTCGTGAAATTAAGGAGAGGATCAAGAAGACAAAGGATGAGAAGAAGGCTAAGAAAGCCGAAGTTGCAGCTAAGTCACAAAAAGCAGGAGGTAAAGGAAATGTTTCCAAGGGTGCTATGCCTAAAGGTCCCAAACTCGGTGGTGGAGGCGGGAAGCGCTGA 495 0.4667 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAAKSQKAGGKGNVSKGAMPKGPKLGGGGGKR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0489 164 Gene3D - 69 139 - -
Vra3g0489 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vra3g0489 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Vra3g0489 164 SMART 4TRASH 8 46 IPR011017 -
Vra3g0489 164 MobiDBLite consensus disorder prediction 118 164 - -
Vra3g0489 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vra3g0489 164 Coils Coil 112 139 - -
Vra3g0489 164 MobiDBLite consensus disorder prediction 118 136 - -
Vra3g0489 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vra3g0489 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vra3g0489 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Vra3g0489 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0489 Vra-Chr3 5547297 5549306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0489 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 2.02e-86 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0489 K02896 - gmx:100499720 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0489 3 5547297 5549306 Vra3g0489 3 5547297 5549306 ECH