Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0482 ATGAGACCCTGCTTCCATTGTTGCTATTCTTATACCTTTCTATTTCTTTTCATTCTCCTTCTCCATCACACTGCTTCACAGAACACTTGCCCAAACTGTGGCTCTATGCAAGTTCCATATCCTTTGAGCACACATCCAAGTTGTGGTGATCCATACTACAAGCTTCGTTGTGATTCCCACTCTCAAAAGCTTTACTTCGACACCCTCAATGGAAGTTCCTATCTCCTTCTCCGAATCATGCCTTCAATCCAACGCATGGTGGTGGAGCCATCACCTTGGTTAGCAGGTTCCTGTGTTACACAAGACATGCCCAGAAGCAACGGTATATGGTTGAACCAGTCACTTCCTTTCAATATAACTTCATCCAATACAGTGTTCCTCCTTAATTGCTCCCCACGCCTCTTGGTTTCTCCTCTCAACTGCACTTATTCTAGTGTTTGCCATCGTTACTTAGAGAGTTCAGGTCATGTTGACACAAAACGAGCGCTTGATTGTGCAAGCGGTCTTCACCCTTGCTGCACTTTTCTAGCCGGTGGGATACCTTCAGCTTACAGGATCAGGCTTCATGAGTCTGGCTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAGGACAAGCCTCCTAATCAGTGGGAGGAAGGGCTTGAAATTCAATGGGCTCTTCCACCTGAACCAGTGTGCAAGACACAAAAGGATTGCTCTGGAGACTCTACGTGTTCCCCTTCTGGTAGAAGTGGTTTATTTCGCTGTCTTTGTAATGGGGGACACCGTTGGGACCCTTTTGTCACAACGTGTGTGAGTGTGAAGTATGAGAGAAAACCCAAATGGAAAACCAGCTTGGTGGTTTCAATAGGGGCTGTTGTTACCTTTTTCTCTCTCGTTGTGGTTCTGACCATCATCTCAAAGTCCCGCAAAATCTCAACCTATAGAGATAATAAAGCGAAGGAAAGAGAAGACAAACTGAAATCAAGTGCTGGGGATAAGCCTTGTAGGATGTTTCAATTGAAAGAGGTGAAGAAAGCAACAAATGGTTTTTCCCAACAGAGGTTCTTGGGAAGTGGTGGCTTTGGGGAAGTTTACAAAGGTGAGCTACAAGATGGAACATTAGTGGCAGTGAAGAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTCTCTCAAGTCAATCACAAGAACTTGGTCAGGCTCTTGGGGTGCTGTGTGGAATCTGAGCTACCATTTATGATCTACGACTATATCTCAAACGGGACACTCTACGACCATCTTCATGGCAAGTATTGTTCCAACTTTCTAAACTGGAAAACGAGGCTCAAGGTTGCTTTTCAAACTGCAGAGGCATTGGCCTACCTGCATTCGGCTGCACACACTCCAATCTACCACAGAGATGTTAAGTCAACAAACATACTATTGGATGATGATTTCAATGCCAAGGTATCAGATTTTGGACTCTCCAGATTGGCTAGCCCAGGACTAAGTCACGTTTCAACATGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGCAACTATCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCACAAAAAGCGATTGACTTCAGTCGTGATGAAGATGATGTGAACCTGGCAATTCATGTGAACCAACGTGCGAGCAATGGTACAATCATGGAATTGGTGGATCAAAGGCTTCTTTCGATAGAGAGCTCGGGAGATAAAATGTTGACAAGCATAAAAGTGTTCTTGGAGCTTGCACTTGAATGTCTGAGAGAGAAGAAAGCTGAAAGGCCAAGTATGAAGGATATTGTTCAAAAGCTACTATGCATAATTAGGATTGAAGAAGGAGAGTGA 1893 0.4406 MRPCFHCCYSYTFLFLFILLLHHTASQNTCPNCGSMQVPYPLSTHPSCGDPYYKLRCDSHSQKLYFDTLNGSSYLLLRIMPSIQRMVVEPSPWLAGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTYSSVCHRYLESSGHVDTKRALDCASGLHPCCTFLAGGIPSAYRIRLHESGCKAFRSILHLNQDKPPNQWEEGLEIQWALPPEPVCKTQKDCSGDSTCSPSGRSGLFRCLCNGGHRWDPFVTTCVSVKYERKPKWKTSLVVSIGAVVTFFSLVVVLTIISKSRKISTYRDNKAKEREDKLKSSAGDKPCRMFQLKEVKKATNGFSQQRFLGSGGFGEVYKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPFMIYDYISNGTLYDHLHGKYCSNFLNWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDDFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDEDDVNLAIHVNQRASNGTIMELVDQRLLSIESSGDKMLTSIKVFLELALECLREKKAERPSMKDIVQKLLCIIRIEEGE* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0482 630 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 21 628 - -
Vra3g0482 630 CDD STKc_IRAK 351 620 - -
Vra3g0482 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vra3g0482 630 Gene3D Phosphorylase Kinase; domain 1 304 420 - -
Vra3g0482 630 Pfam Protein kinase domain 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0482 630 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 628 IPR045274 GO:0007166
Vra3g0482 630 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Vra3g0482 630 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Vra3g0482 630 SMART serkin_6 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0482 630 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0482 630 SUPERFAMILY Protein kinase-like (PK-like) 324 620 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0482 Vra-Chr3 5496847 5499310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0482 30 626 Receptor kinase-like Gene Family AT5G02070 47.826 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra3g0482 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0482 - - vra:106757280 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0482 3 5496847 5499310 Vra3g0482 3 5496847 5499310 ECH