Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0480 ATGGCGGTTCCTCCGTCGGTCGCTGCCTCTCCGGCGTCACTCTACGTCGGCGACCTCCATTCTGACGTCTCTGACAGCCACCTCATCGATGTATTCTCCGAGTTCAAGAGCCTTAACTCCGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTATGGCTACGTCAACTTTGTTTCTCCTCAGGACGCAATTCGTGCAATCGAGACTAAGAATCATACGTTGCTGAATGGAAAAATGATTAGAGTGATGTGGTCGCGTCGCGATCCTGACGCGAGGAAGAGCACTATTGGGAACTTGTTTATTAAGAACATACCGGAATCGATAGATAATGCTGGACTGCAAGATATATTCAAGAAATATGGAAATATTTTGTCCAGCAAAGTTGTCACGTCTGACGATGGGAAGAGTAAAGGATACGGTTTTGTTCAATTTGAATCGGAGGAATCCTCTCATGTTGCTATAGAGAAGATGAATGGCTCTACTGTTGGTGATAAACAGTTATATGTCGGGAAGTTTGTAAAAAAAAGTGATCGCATATTTCCTGGCGCGGATGCTAGATATACAAACTTGTACATGAAGAATTTGGACTTGGGTATTACAGAAGCAAAATTGAAGGAGAAGTTTTCCTCTTTCGGGAAGATTGTTAGCTTGGCTATTGCAAAGGACCACAATGGGATGCCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGGAATGAATGGATCACAATTAGGTTCTAAGATTCTGTACGTAGCCAGAGCGCAAAAGAAAGCTGAGCGCGAGCAGATCTTGCACCACCAATTTGAGGAGAAACGGAAGGAACAAAAATTGAAATACAAGGGGTCGAACGTTTATGTGAAAAACATTCATGACAATGTAAGTGACGAAGAACTGACGGATCTTTTCAGTGCATGTGGCACTATAACTTCTGCAAAAGTTATGCAAGATGACAAAGGCATATGTAAAGGGTTTGGCTTTGTCAACTTCTCCACTCCTGAGGAGGCTAATAAAGCCGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTGTATGTTGCCCTTGCTCAGAGGAAAGAGGACAGGAAAGCACAATTGCAGCTTCAATACACACAGCAAATAGGAGGACTAGCTGGACCTTCGACTACTAATATCCCTGGTGGATACACTCCTTATTATTATGCAGCTACTGGTGCTATTTCACATGTGCCTCCTCGAGCTGGACTGATGTATCATTCTCTTGCATTGAGGCCGGTATGGGGAGCTAATGCCTTTGCACCCCCTGCTATATCATTTCAACAGTCATCTGTTCCCGCAGTTTCTAACAATAATAGGCACCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGCATCACAGGGAAATACTCAGTCTGGTACTTATTTGCAACAAGGCCAGCAGACTTCTCAGTCAACGATCTCTCCAAGAGACTCAAGTACTCAGCAGAGAACCGGACAGCTTAAGTATATACCCAATGGACGCCAGCGTGAAATGGAAAAAGGATCTGGTTCCTCATCCGCTACTTCAAATTCTGGTAGGGGGTCCCAGGGGCCAGAAATGCTGCATAGCTTTCTTGCAGGGGCTGCTCCCGAGCAGCAGAAAGAGATACTCGGAGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCAGCAAAAATAACAGGTATGCTTTTGGAGATGGACAATGGAGAATTGTTGGTTCTCCTGGAATCGCCGGAGGCTCTTTCCGTGAAGGTGGAAGAAGTTGTGGAAGTGCTTAAGAACACTAAGACCAAAGTGGACGTACTCCGTTCAAATTACCTTTCAGCTGAAGTTGCAGTAAACTAA 1899 0.4481 MAVPPSVAASPASLYVGDLHSDVSDSHLIDVFSEFKSLNSVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIETKNHTLLNGKMIRVMWSRRDPDARKSTIGNLFIKNIPESIDNAGLQDIFKKYGNILSSKVVTSDDGKSKGYGFVQFESEESSHVAIEKMNGSTVGDKQLYVGKFVKKSDRIFPGADARYTNLYMKNLDLGITEAKLKEKFSSFGKIVSLAIAKDHNGMPKGFGFVNYDNPDDAKKAMEGMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQKLKYKGSNVYVKNIHDNVSDEELTDLFSACGTITSAKVMQDDKGICKGFGFVNFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYTQQIGGLAGPSTTNIPGGYTPYYYAATGAISHVPPRAGLMYHSLALRPVWGANAFAPPAISFQQSSVPAVSNNNRHHRQNRGRLNGHSASQGNTQSGTYLQQGQQTSQSTISPRDSSTQQRTGQLKYIPNGRQREMEKGSGSSSATSNSGRGSQGPEMLHSFLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLVLLESPEALSVKVEEVVEVLKNTKTKVDVLRSNYLSAEVAVN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0480 632 MobiDBLite consensus disorder prediction 519 538 - -
Vra3g0480 632 PANTHER RNA BINDING PROTEIN 535 619 - -
Vra3g0480 632 PANTHER RNA BINDING PROTEIN 5 529 - -
Vra3g0480 632 SMART rrm2_1 295 367 IPR003954 GO:0003676
Vra3g0480 632 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vra3g0480 632 SMART rrm2_1 13 86 IPR003954 GO:0003676
Vra3g0480 632 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vra3g0480 632 Gene3D - 536 616 - -
Vra3g0480 632 Coils Coil 263 283 - -
Vra3g0480 632 CDD RRM2_I_PABPs 99 174 IPR045305 -
Vra3g0480 632 MobiDBLite consensus disorder prediction 452 541 - -
Vra3g0480 632 CDD RRM4_I_PABPs 293 371 - -
Vra3g0480 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vra3g0480 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Vra3g0480 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vra3g0480 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Vra3g0480 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vra3g0480 632 PANTHER POLYADENYLATE-BINDING PROTEIN 5 529 - -
Vra3g0480 632 PANTHER POLYADENYLATE-BINDING PROTEIN 535 619 - -
Vra3g0480 632 SUPERFAMILY PABC (PABP) domain 503 616 IPR036053 GO:0003723
Vra3g0480 632 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Vra3g0480 632 MobiDBLite consensus disorder prediction 467 510 - -
Vra3g0480 632 Gene3D - 2 99 IPR012677 -
Vra3g0480 632 Gene3D - 181 274 IPR012677 -
Vra3g0480 632 SUPERFAMILY RNA-binding domain, RBD 290 394 IPR035979 GO:0003676
Vra3g0480 632 SMART poly_2 550 613 IPR002004 GO:0003723
Vra3g0480 632 SUPERFAMILY RNA-binding domain, RBD 183 275 IPR035979 GO:0003676
Vra3g0480 632 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vra3g0480 632 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vra3g0480 632 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vra3g0480 632 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vra3g0480 632 Gene3D - 100 180 IPR012677 -
Vra3g0480 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Vra3g0480 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Vra3g0480 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vra3g0480 632 CDD RRM1_I_PABPs 13 92 - -
Vra3g0480 632 Gene3D - 275 383 IPR012677 -
Vra3g0480 632 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Vra3g0480 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vra3g0480 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0480 Vra-Chr3 5480130 5484372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0480 12 630 Eukaryotic Initiation Factors Gene Family AT2G36660 52.215 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0480 K13126 - gmx:100779547 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0480 3 5480130 5484372 Vra3g0480 3 5480130 5484372 ECH