Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0475 ATGGACACAGTTCTGGTACCTCCATGGCTGGAACAACTTCTTCACACACCTTTCTTCAATGTATGTCGAATTCACGCAGACGCAGCGAGGAGTGAATGTAACATGTTTTGTCTAGATTGCAATGGCGAAGCCTTCTGTTTTTATTGCCGTTCTTCTCGACACAAAGATCATCGAGTAATTCAGATAAGAAGATCTTCGTATCATGATGTAGTGAGGGTGGCTGAAATTCAGAGGGTGTTGGACATAAGTGGAGTGCAGACATATGTGATAAACAGTGCTAGAGTTTTGTTCTTGAATGTGAGGCCACAACCGAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGATGTAAGCTTGAAGGAATAAAGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGAAATGAAGAATTGACAATGGAGACTACCACCACTACCACCACATCAACTTCAAGAGGATCAGTCTCATCAAATCAGCAAGAAGAAGGATTGCGTGAAGGTTCAACACAAGACATGTATCAAGTCACACCTCCTTCAAACGCAAGGAGAAGAAAAGGAATTCCTCATAGGGCACCCTTTGCCTCCTAA 636 0.4324 MDTVLVPPWLEQLLHTPFFNVCRIHADAARSECNMFCLDCNGEAFCFYCRSSRHKDHRVIQIRRSSYHDVVRVAEIQRVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFALDGRNEELTMETTTTTTTSTSRGSVSSNQQEEGLREGSTQDMYQVTPPSNARRRKGIPHRAPFAS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0475 211 MobiDBLite consensus disorder prediction 151 211 - -
Vra3g0475 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 210 - -
Vra3g0475 211 SUPERFAMILY B-box zinc-binding domain 19 64 - -
Vra3g0475 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 210 - -
Vra3g0475 211 MobiDBLite consensus disorder prediction 153 193 - -
Vra3g0475 211 Pfam PLATZ transcription factor 63 134 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0475 Vra-Chr3 5451809 5453925 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vra3g0475 PLATZ 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0475 - - gmx:100803076 379.407