Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0474 ATGAACTCCTATGTCACCCCTCTTGTTATCTCCATTGTTGGCATAGTTTGTTCTACTGTGGCAATGGCTGTGTACCTCTGCATAATCCTCTTGAGGCAAGTCGTTAGAACTCACAATGCACAAAGAATCCTCTTGAGGCGTGTTGTCAGAACTCACAATGCACAACGCAGGGACAACACATCTTGTGTAAAGAGTGAAGGGATCCAACAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACAACACAAACATGTAGTAGTAGTGCCATTGCCATTCATTTGAACCAAAATATTGAATGCTCCATTTGCCTTGGACAGTGGGAAGATGAGGATGTGGTGCGGTTGTTGCCTTCTTGTAATCATGTTTTTCACAAATCCTGCATTGATGCATGGTTCATGCACCATGCCAATTGCCCAGTTTGTCGATCACCAGTCACTTCTGACTGTGAGTTAGCGTTGCCAATGGCTTCACAAAATGCTGATGCCTAA 495 0.4323 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNADA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0474 164 PANTHER RING-H2 FINGER PROTEIN ATL73-LIKE 3 157 - -
Vra3g0474 164 Pfam Ring finger domain 101 144 IPR001841 -
Vra3g0474 164 SMART ring_2 102 143 IPR001841 -
Vra3g0474 164 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vra3g0474 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 157 IPR044675 -
Vra3g0474 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 150 IPR013083 -
Vra3g0474 164 SUPERFAMILY RING/U-box 93 150 - -
Vra3g0474 164 CDD RING-H2_PA-TM-RING 101 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0474 Vra-Chr3 5449239 5449733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0474 7 157 C3H Transcription Factor Family AT2G35420 33.117 4.45e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0474 - - vra:106756930 336.65