Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0472 ATGATGGGATTCAACAGAAACCTCTTCTGCCTTTCTGCCTTTCTCATTTTTCTCTTTTCTATCTCCTTTATTTTCTATTGCACTTCACCTTCCCCCACTGATAACACAGCCATTAATCCTCACGACAGTTTCAGTTTCCAGCTTGGTATATTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACACCATCACCACCACCATCATCATCATCAAAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTTATTCAAGCCTATAACGTGAGTCTTGTTTTCACGGTTGATTTAAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTCATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGATGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGATATCTGAATACATTCATAGAATGGAACGACACCGCCAATTCCACCGGCGGTACTTCCTACAGCTACTCTTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCCCCACCGTCACCAGGAGAGGTGGGGGCACAAGCAGTAGCACTGAGAGTCACCGGTGATCAAGCAGCCTTCTATGGATGTGGATTTTATGGTGCACAGGATACACTGAATGATGATCGTGGAAAACATTATTTCAAAGAATGCTTAATCCAAGGTTCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGATGAGATTAGTGGGTCGATCACTGCTCAAGGGAGACAATCGATGGATGATAAAAGTGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGAGCCTATGCCACTGTCATCTTCTCGACAACATACATGTCTGATGTCGTAGCACCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCGTTGCCATGGAGCTGGAGCAAATTATTCATCCAGAGTCTCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCTTACATGGATATTTCATACATTGATGGAAATGATTGGCTCCTTAATTATCGTTATACTTATGTTGAATAG 1191 0.4282 MMGFNRNLFCLSAFLIFLFSISFIFYCTSPSPTDNTAINPHDSFSFQLGIFSGAQDLVSLITSIARRRHHHHHHHHHQKEKCEGAKWDSRLIQAYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVDVQANKTNLIIQGQGYLNTFIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDRGKHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKDEISGSITAQGRQSMDDKSGFSFVNCSIVGSGRVWLGRAWGAYATVIFSTTYMSDVVAPEGWNDWRDPSRDRCHGAGANYSSRVSYAKQLRDYEANSYMDISYIDGNDWLLNYRYTYVE* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0472 396 SUPERFAMILY Pectin lyase-like 97 391 IPR011050 -
Vra3g0472 396 Pfam Pectinesterase 103 383 IPR000070 GO:0030599|GO:0042545
Vra3g0472 396 PANTHER PECTINESTERASE 14-RELATED 11 390 - -
Vra3g0472 396 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 390 - -
Vra3g0472 396 ProSitePatterns Pectinesterase signature 2. 249 258 IPR033131 -
Vra3g0472 396 Gene3D - 95 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0472 Vra-Chr3 5419424 5422684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0472 103 387 Carbohydrate Esterase AT1G05310 53.716 1.80e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0472 - - vun:114181275 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0472 3 5419424 5422684 Vra8g1323 8 29239985 29245373 PCT