Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0458 ATGGCTTTCCTCTCGGGAGCCATCCTAATCACAACATTGGTCTTTCTTGTAGCATTCTCACTTCCTAATGTCCATGCTGCTGGCAAAAGCAATAACAAATATAACAAGAAAGGTGAACTCAGACATCATCGTCCAATTTTTAAGCCTACTGGATGGAAGAAAGCTCTTGCAACCTTCTACGATGGAGACACTAAAACATTTGGTGGAGCTTGTGGGTACGATGATGTGGTTAAGGATGGCTATGGCCTAGATACGACAGCATTGAGTTCAGTTTTGTTCAAGGATGGACAGACATGCGGTGCATGTTACGAGATCAAATGTGTAAATTCTCGTGCAGGATGTAAGGCAGGGAAATCCTCTATTTTTGTGACGGGAACCAATCTTTGCCCTCCAAACTACGATATACCTGGTGATAATGGAGGATGGTGCAACCCACCACGCGAACACTTTGATTTGGCCAAACCTGCATATCTCAAAATTGCAGAGTATAAGGCTGGCATAGTCCCAATCAATTATCGCAGGGTACCGTGCAAGAAGAAAGGAGGAATTCGGTTCACTATCACTGGGAATCCTTATTTTAATCTGGTATCAGTGTGGAATGTTGGAGGAGCTGGAGATATCACACAAGTGCAGCTAAAGGGTAACAAGAAAATCAAGCATTGGACAAATTTGAAGCGAAATTGGGGTCAAAAATGGGAAACTGATGTCATGTTAGTGGGAGAGGCACTGTCTTTCAGAGTGAGAAGCAGTGATCTCAGGTACTCTACCTCTCGCTGGATTGCTCCCAGTAATTGGAAATTTGGTCAGACTTTTGTTGGCAAGAACTTCGTTTAG 834 0.4353 MAFLSGAILITTLVFLVAFSLPNVHAAGKSNNKYNKKGELRHHRPIFKPTGWKKALATFYDGDTKTFGGACGYDDVVKDGYGLDTTALSSVLFKDGQTCGACYEIKCVNSRAGCKAGKSSIFVTGTNLCPPNYDIPGDNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPINYRRVPCKKKGGIRFTITGNPYFNLVSVWNVGGAGDITQVQLKGNKKIKHWTNLKRNWGQKWETDVMLVGEALSFRVRSSDLRYSTSRWIAPSNWKFGQTFVGKNFV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0458 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 273 IPR007117 -
Vra3g0458 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 182 IPR007112 -
Vra3g0458 277 SUPERFAMILY PHL pollen allergen 179 272 IPR036749 -
Vra3g0458 277 Gene3D - 39 178 IPR036908 -
Vra3g0458 277 Gene3D - 180 276 IPR036749 -
Vra3g0458 277 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Vra3g0458 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Vra3g0458 277 PANTHER EXPANSIN-A32 10 276 - -
Vra3g0458 277 SMART dpbb_1 85 172 IPR007112 -
Vra3g0458 277 Pfam Expansin C-terminal domain 183 262 IPR007117 -
Vra3g0458 277 Pfam Lytic transglycolase 86 172 IPR009009 -
Vra3g0458 277 SUPERFAMILY Barwin-like endoglucanases 51 200 IPR036908 -
Vra3g0458 277 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Vra3g0458 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vra3g0458 277 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Vra3g0458 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Vra3g0458 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Vra3g0458 277 PANTHER EXPANSIN-A15 10 276 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0458 Vra-Chr3 5271468 5272766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0458 46 276 Expansin Gene Family AT3G55500 62.232 2.69e-104 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0458 - - gmx:100800424 429.869