Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0454 ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGGAAGAAGCAGCACCGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAAATGAATTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCCCGAGGCCATACCACTCCAAAACCCTCACACGGCAAGGAATCGGGGCTGTATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGGGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGGACTAGTTACTACTTTTGGGGATAATAGTAGTAAAAATTATCATGATGATTATTGTGTCCCCACAAGCACCACCCTCACCTTACAATTATCAACGGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACTGTTAATGCTAAATCTAAGATTCATGAGTGTTCTATATGCGGGGCAGAGTTCTCATCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGAGTGGAGCAATTGCATATGCTGGTGATGGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACCTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAACTTGTTTCCTTTTAAGTCCAAAGAAAAAGTCATTGTCTTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 819 0.453 MQMQEEHMQIIKGKRTKRQRLPSPLRLTMSTCSTAGRSSTDNSAAFEPPTTSNELRNEEDEDLANCLILLARGHTTPKPSHGKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKAGAEEKQGLVTTFGDNSSKNYHDDYCVPTSTTLTLQLSTVLYNSSNSTRSSTVNAKSKIHECSICGAEFSSGQALGGHMRRHRNFLSSPSSGAIAYAGDGIPEIPEIKKQKDVLNLDLNLPAPEDDHHRESNLFPFKSKEKVIVFSATSLVDCHY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0454 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Vra3g0454 272 SUPERFAMILY beta-beta-alpha zinc fingers 89 199 IPR036236 -
Vra3g0454 272 MobiDBLite consensus disorder prediction 23 52 - -
Vra3g0454 272 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Vra3g0454 272 MobiDBLite consensus disorder prediction 1 58 - -
Vra3g0454 272 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 3 271 - -
Vra3g0454 272 PANTHER ZINC FINGER PROTEIN ZAT5 3 271 - -
Vra3g0454 272 Gene3D Classic Zinc Finger 87 199 - -
Vra3g0454 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 199 IPR013087 -
Vra3g0454 272 SMART c2h2final6 90 112 IPR013087 -
Vra3g0454 272 SMART c2h2final6 177 199 IPR013087 -
Vra3g0454 272 Pfam C2H2-type zinc finger 177 200 - -
Vra3g0454 272 Pfam C2H2-type zinc finger 89 113 - -
Vra3g0454 272 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0454 Vra-Chr3 5230958 5232575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0454 6 272 C2H2 Transcription Factor Family AT2G28200 42.667 2.10e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra3g0454 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0454 - - vun:114196157 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0454 3 5230958 5232575 Vra8g1884 8 36165974 36167589 ECH
Vra3g0454 3 5230958 5232575 Vra3g0454 3 5230958 5232575 ECH
Vra3g0454 3 5230958 5232575 Vra4g0368 4 6546003 6547306 ECH
Vra3g0454 3 5230958 5232575 Vra8g2121 8 39033583 39034871 PCT