Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0448 ATGCTCCAGACAACCTGCATTTTCCTACTCTCTCTTCTAACTTCTTTTTCACCACTTGGAACGGCAATGCTTAACCTAACCCTTCCAGGAGCACATCCAGACCCCGAAGCTGTTGCCCACGAAGTTCATAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAGATGTTATCAGTGTCAGAGAGAGACGAGTCTTCGTGTCTAACGGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCTGACTGCGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGGAAAGGTGGTGAGTTTTACGTGGTCACTGATTCCTCTGACGGGGACCCTGTGAACCCAAAACCTGGGACGCTGAGATACGCTGTGATACAGAACGAGCCACTCTGGATCGTCTTCCCCAGTAACATGATGATTAAGCTGTCCCAGGAGCTGATTTTTAACAGCTACAAGACCATTGATGGCCGCGGTGCTGATGTGCACATCGTCGGAGGAGGCTGCATTACTCTGCAGTATATAAGCAATGTCATCATACACAACATTCATATCCATCATTGTCATCCCTCAGGGAACACGAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAGTCGGACGGGGACGGAATATCTATATTCGGGTCGAAGGATATATGGATCGACCACTGCACCCTGTCACGGTGCAAGGATGGGCTGATAGACGCGGTGATGGGGTCGACGGGGATAACCATCTCGAACAACTACCTCTCACACCACAACGAGGTGATGCTCCTGGGCCACAGCGACGACTACCTCCCAGACTCCGGCATGCAGGTAACCATCGCCTTCAACCACTTCGGAGAGAAGCTGGTCCAGAGAATGCCCCGCTGCCGGAGGGGCTACATCCACGTCGTCAACAACGACTTCACGGAGTGGGAGATGTACGCCATCGGTGGCAGCGGCGAACCCACCATTAACAGCCAGGGGAACCGTTACATGGCACCCCAAAACCCCTTCGCCAAGGAGGTTACGAAACGAGTGGACACCCAACAGTCAAAGTGGAAGGGCTGGAACTGGAGGTCTGAGGGTGACATTTTACTTAACGGTGCCTTCTTCGTGGCGTCTGGCGAGGGCCTCGAGGTCAAGTACGAGAAAGCCTACAGCGTTGAACCTAAATCAGCCGATCGTATCTCTCTTCTCACCATGTCCTCCGGTGTTCTTGGAAATGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCTGGTGATGAATCTACGGAGTCCGGCATGGAATACACCGACGAGATGTCCACCACTGCAACAATCCTTCCACCGTCTCTTTTTCTTTTGTTGTCTTCCACAATAATCTTCACGGTTATTCTATAG 1398 0.5229 MLQTTCIFLLSLLTSFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSERDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDGDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPQNPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTMSSGVLGNARDNNLGMWSRGPGDESTESGMEYTDEMSTTATILPPSLFLLLSSTIIFTVIL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0448 465 Pfam Pectate lyase 153 329 IPR002022 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Vra3g0448 465 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Vra3g0448 465 PANTHER PECTATE LYASE 12-RELATED 1 426 - -
Vra3g0448 465 SUPERFAMILY Pectin lyase-like 64 394 IPR011050 -
Vra3g0448 465 Gene3D - 69 411 IPR012334 -
Vra3g0448 465 PANTHER PECTATE LYASE 18-RELATED 1 426 IPR045032 GO:0030570
Vra3g0448 465 SMART amb_all 144 341 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0448 Vra-Chr3 5177347 5180499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0448 1 465 Polysaccharide Lyase AT3G53190 74.419 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0448 K01728 - gmx:100775595 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0448 3 5177347 5180499 Vra3g0448 3 5177347 5180499 ECH
Vra3g0448 3 5177347 5180499 Vra8g2125 8 39168367 39173589 PCT