Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0445 ATGGGGGTGGCGGAGTTGAGAGGAATGAAGAGTTTCGGCTACAATGTTATCACCGGGCGTTGGTTCATGCTGTTTGCATCTTTACTTATCATGTCCGTTGCTGGGGCAACCTATATGTTTGGAGCATACTCTAACGAGGTCAAAACCTCTTTGGGGTACGACCAATCCACTCTCAACTTGCTCAGTTTCTTCAAAGACCTAGGTGCCAACGTTGGAGTGGTATCCGGGTTGGTCAACGAGATAACACCACCCTGGGTGGTACTCTCTATAGGGGTTCTTATGAACTTCTTTGGCTACTTCATGATATGGCTTGCAGTCTCTGGCCGCATTGCCAAACCCCAACTTTGGAAAATGTGTCTCTACATTTGCATTGGTGCAAATTCTCAAACCTTTGCCAACACTGGTGCTTTGGTCACATGTGTCAAGAACTTCCCAGGAAGCCGTGGCAGTCTTTTAGGCCTACTCAAAGGTTACGTTGGTCTAAGTGGTGCCATCATCACACAGCTCTACCATGCCTTCTATGGTGATCACAACCCTCAGGCCCTTATCTTACTCATTGCTTGGCTCCCTGCCGCTGTTTCCTTCCTTTTCCTTCCAACAATTCGGATATTCAACACAGTCCACCAGCCTAAGAACAACAGAGTTTTCTACCACCTTCTGTATATTTCACTTTGTCTTGCTGGGTTTCTCATGGTTTTGATCCTTGTACAAAACAAGCTTAGTTTCTCAAGGATTGAGTACACAGTCGATGGCCTTGTTGTTCTCTCCTTTCTTCTTCTCCCACTCGCTGTGGTATTTAGAGAGGAGGTAAATCATTTAAAGGCCAAAACGGAAGGTTTGACCGATTCAGCACCTGAGTTGAAAGTAGTCACTGAAGTTATTCCACCTCCAAACGTCGAGCAAGAAGTACTACCAACTACCACAAGTTCACACGAGAAAAGTTCGTGTTTCAGGAACATACTCAACCCCCCTAAGAGGGGAGAAGACTACACCATTTTGCAAGCACTTTTCAGTGTGGACATGCTGACTTTGTTCGTTGCAACAACGTTCGGTGCTGGCGGAACATTAACAGCCATAGACAATCTAGGACAGATTGGAAACTCATTGGGTTACCCGAGTAAAAGCACGACAACCTTTGTGTCCTTGGTGAGCATATGGAACTATTTAGGAAGAGTAGCTGCAGGTTATGCCTCTGAAGTCCTCTTAGCCAAATACAAAGTTCCTCGTCCCTACATGGTTACTCTAGTTTTGCTTCTCTCTTGTGTTGGGCATATTCTGATAGCCCTTGGCGTCCCAAACTCTCTCTACTTGTCTTCAGTGATTATTGGGTTTTGTTTTGGAGCTCAGTGGCCACTGATGTTTGCAATCATATCAGAAATATTTGGCCTTAAATACTACTCCACGCTATACAACTTAGGAGGCGCGGCAAGCCCTGTTGGATCGTACATTCTAAACGTGAAAGTGGCTGGTGTTTTGTATGATAAAGAGGCTTTGAAACAATTGAAGGCCAAAGGACTAAGGAGAGAAGCAGGGAAGGACCTAACTTGTGTAGGAGTGCAATGCTACAGAATGGCTTTTATCATAATCACAGCTTCAACGTTGGTTGCGTGTTTAGCCTCGTTCATCTTGGCTCTGAGGACTAGAAAATTTTACAAAGGGGATATCTATAGAAAGTTTAGAAGGGAACATGAAACAACAGAGAATGAGACGGAGATTACAAAGGAAGGTGTTAAGTGTTCTGGTTGA 1746 0.4473 MGVAELRGMKSFGYNVITGRWFMLFASLLIMSVAGATYMFGAYSNEVKTSLGYDQSTLNLLSFFKDLGANVGVVSGLVNEITPPWVVLSIGVLMNFFGYFMIWLAVSGRIAKPQLWKMCLYICIGANSQTFANTGALVTCVKNFPGSRGSLLGLLKGYVGLSGAIITQLYHAFYGDHNPQALILLIAWLPAAVSFLFLPTIRIFNTVHQPKNNRVFYHLLYISLCLAGFLMVLILVQNKLSFSRIEYTVDGLVVLSFLLLPLAVVFREEVNHLKAKTEGLTDSAPELKVVTEVIPPPNVEQEVLPTTTSSHEKSSCFRNILNPPKRGEDYTILQALFSVDMLTLFVATTFGAGGTLTAIDNLGQIGNSLGYPSKSTTTFVSLVSIWNYLGRVAAGYASEVLLAKYKVPRPYMVTLVLLLSCVGHILIALGVPNSLYLSSVIIGFCFGAQWPLMFAIISEIFGLKYYSTLYNLGGAASPVGSYILNVKVAGVLYDKEALKQLKAKGLRREAGKDLTCVGVQCYRMAFIIITASTLVACLASFILALRTRKFYKGDIYRKFRREHETTENETEITKEGVKCSG* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0445 581 Pfam Nodulin-like 20 266 IPR010658 -
Vra3g0445 581 Gene3D MFS general substrate transporter like domains 332 551 IPR036259 -
Vra3g0445 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 576 - -
Vra3g0445 581 SUPERFAMILY MFS general substrate transporter 21 554 IPR036259 -
Vra3g0445 581 Pfam Major Facilitator Superfamily 364 547 IPR011701 GO:0022857|GO:0055085
Vra3g0445 581 PANTHER MFS TRANSPORTER 5 576 - -
Vra3g0445 581 CDD MFS_Mch1p_like 19 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0445 Vra-Chr3 5157558 5159996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0445 9 562 Nodulin-like Gene Family AT2G39210 64.121 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0445 - - gmx:100797779 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0445 3 5157558 5159996 Vra3g0445 3 5157558 5159996 ECH
Vra3g0445 3 5157558 5159996 Vra8g2127 8 39266279 39268962 PCT