Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0440 ATGGCGTCTCCTATTGAATTCGCGGACTACGAGGAAAACCTAATCGAGGCGCCGCAACTTATTGGAAACCCCGCAGACTATGGAATCACTGAAGATGAAGAAACCGAAGAAGACGAAGACGAAGACGACGAAGAGTACGTTCCCGGTGTGGCCACCCCTAGGGTTTCGCACGACACTGATAACGTAATTATTATCCCCGAAGAATCGCAGGATTGCGTGGGAGAGGAGAGGAATAAACGCCGTAGGTTCGACGGAGGCGAGGCTTCTTGTTCCTTCGCGACTGGGAGCAGCAACGGGAGTCAAGAAAACGATCATACCGACATTGACGGTCTTTCTTGCCCTATTTGCATGGATGTTTGGACCAATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAGATGGCTTCAACAACGCAAAAATTCCAGCAAGTGTCCCCAATGTAATAGGAAATGTACGTTGAAGGATGTGAGGAAACTGTTTGCTTCCCGAGTAGTTGCGGTCGAGGAAGAATCTCAGAAGAGAATTCAGTCACTTGAGGCCAAATGTGCTGCCCTTGACAATAAGGTCAGTGATTGGTGCAAGAAAGAAGAGGGATGGAAACGTCGAGAAGTCACCTTGCATTCTCAAGTTCAGACTCTTACACAGAGAAACGCTTATTTGGAGCAGCTGCTACTAGATATGCAGAGCAGGGAATCTGCATCGATAAGTCGCAATGGAAACTCTCAGGGGAGATGTGAATCTGGCCCAAAGTACTGTGGAAAGGGATCCATTTGTAATTTTGAATTGCAGAAAGAGATTCATCTCGATGGTGCACGCATTTTTGATATGGACATTTCTAATCAAATTTTATTAATCGCACAAAAGCCAAAGGAAGTAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGTTGTCTCCATCTGAGATGCAAGATATCTTACTGCCTTCTGCTACAAGTGGTGTTAAAGACCTTCATATTTCTCCTTCTAATAGTAGTATGGCTCTCTTTTCTTCATTGGGGAAGAAACTATCAGTGCTCAGCTTGGACAGTGGCAATCTTGTTATCAATTATGATCTAAAGGATCCTGCATGGTCTTGTTCGTGGGATCTGAACAATTCGCATAACATATATGCTGGACTACAGAATGGTTCTATCTTAGTGTTTGACATGCGTCAAACTGTAGGCCCCATGAAATCTTTAGTTGGTTTGACTAATAACCCTGTGCATACTGTCACTTCTCTTGCACAAACTTCAAGTCTTTCTTCGGGTGTTAAAACCATCCTATCGGCATCTGCCTTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTGTGGTTCCTGAAACTGATAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCATACAGACCGAAATTCAACATGTCGATGGATGTGCCTCTATCTCAACCGTTGGCCACTCCTCTCAGTGCTGGACAAGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGTAGTCATCAGTTCCAAAAGTTGGGTTCCTCCCATGCAAATGTGAGTAAAATTAGACTACCAAAATGTGTAATTATGGACATAGAGAGTCAGAGCAGATTGTTAGCATCTTGGGATGAAGTTACATGTGATTTGGTCGTGCATGAGTTGCCATCTTTTAGACTTCTTCAGCAATTCAAAATTCCAGTTCAGGCCCGTGATCTTAGGTACTCACCTAGACACGGCGTGCTGGGTTGTCTAAGTGAGAACACGTTGCAGCTTTTCTATTCCAAACACTCGTCGGTAAGGTAA 1854 0.4434 MASPIEFADYEENLIEAPQLIGNPADYGITEDEETEEDEDEDDEEYVPGVATPRVSHDTDNVIIIPEESQDCVGEERNKRRRFDGGEASCSFATGSSNGSQENDHTDIDGLSCPICMDVWTNNGEHHICCLPCGHIYGMSCIKRWLQQRKNSSKCPQCNRKCTLKDVRKLFASRVVAVEEESQKRIQSLEAKCAALDNKVSDWCKKEEGWKRREVTLHSQVQTLTQRNAYLEQLLLDMQSRESASISRNGNSQGRCESGPKYCGKGSICNFELQKEIHLDGARIFDMDISNQILLIAQKPKEVGGMHLLTKMSLLSPSEMQDILLPSATSGVKDLHISPSNSSMALFSSLGKKLSVLSLDSGNLVINYDLKDPAWSCSWDLNNSHNIYAGLQNGSILVFDMRQTVGPMKSLVGLTNNPVHTVTSLAQTSSLSSGVKTILSASAFGLCQWNIDSEERPLVVPETDNQGVCISLAYCPSSDDIVASYRPKFNMSMDVPLSQPLATPLSAGQGVQGTHVLFNRMGSHQFQKLGSSHANVSKIRLPKCVIMDIESQSRLLASWDEVTCDLVVHELPSFRLLQQFKIPVQARDLRYSPRHGVLGCLSENTLQLFYSKHSSVR* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0440 617 CDD mRING-C3HGC3_RFWD3 109 159 - -
Vra3g0440 617 MobiDBLite consensus disorder prediction 16 54 - -
Vra3g0440 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 199 IPR013083 -
Vra3g0440 617 SUPERFAMILY RING/U-box 106 165 - -
Vra3g0440 617 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 31 609 - -
Vra3g0440 617 ProSiteProfiles Zinc finger RING-type profile. 113 159 IPR001841 -
Vra3g0440 617 MobiDBLite consensus disorder prediction 29 46 - -
Vra3g0440 617 SMART ring_2 113 158 IPR001841 -
Vra3g0440 617 Coils Coil 179 206 - -
Vra3g0440 617 Gene3D - 200 493 IPR015943 GO:0005515
Vra3g0440 617 SUPERFAMILY WD40 repeat-like 271 580 IPR036322 GO:0005515
Vra3g0440 617 Pfam Ring finger domain 112 159 IPR001841 -
Vra3g0440 617 PANTHER RFWD3 PROTEIN 31 609 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0440 28 171 C3H Transcription Factor Family AT3G07200 25.581 2.88e-09 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0440 3 5101883 5107535 Vra3g0440 3 5101883 5107535 ECH