Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0435 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCCCAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTCGATTAAGGTGGCTTAATTATCTTAGACCCAACATCAAGCATGGTCAATTTTCTGTTGAAGAAGACAAAATAATCTGTAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGCTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGACGGCCATGAATCCTTCTCCCCAGAAGAAGCCTCTTCAAATTACCCTTTTATCCATCCTTGAAAGCTCAACACCTTCTTCATCATCGTTGTCATTCAGAGACAACAGCAGCAACAACAACTCATACTACCATCCCCACGGTTCTTTCACAGGCGTCGGGTCCTTTTCCTACTCTTCATGTCTTCTGAGTGGAAACAGCTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGGACCCCACCCAGAAGGGCCAATTCAAAGATAGCAGCAGCAATAGCATGCTTGTGTTCGGTGGTGAAGCCACAGCCACCAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGACAAATCATGGAGTCAGAATTTGGCGAGGCGAGCTTTGTGGAGCAGATATGTGTTGCTGATAATCCCCTCTACATTGGGGTGGAAAATACTACTAACAAGTTGATGATGTTCTCCAGTGGTGGCAGTGCTAGTGTCAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCGTTGGATTATGGTATAGAGGAAATTAAACAGCTAATTAGCACTAATAACAGTTTTAACAACTTTTTGTTTGATGATAAGAAGACAGAAGAAAGGGTCACGTATTACTGA 1005 0.4428 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSVEEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMTAMNPSPQKKPLQITLLSILESSTPSSSSLSFRDNSSNNNSYYHPHGSFTGVGSFSYSSCLLSGNSSSASADSFFQAQESFMDPTQKGQFKDSSSNSMLVFGGEATATSCSSSDASCNNQIRQIMESEFGEASFVEQICVADNPLYIGVENTTNKLMMFSSGGSASVSGWTDKQNGLWEQNPLDYGIEEIKQLISTNNSFNNFLFDDKKTEERVTYY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0435 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra3g0435 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra3g0435 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra3g0435 334 CDD SANT 71 113 IPR001005 -
Vra3g0435 334 Gene3D - 7 68 - -
Vra3g0435 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra3g0435 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra3g0435 334 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 284 - -
Vra3g0435 334 CDD SANT 16 62 IPR001005 -
Vra3g0435 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra3g0435 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra3g0435 334 PANTHER OS09G0431300 PROTEIN 1 284 - -
Vra3g0435 334 Gene3D - 69 132 - -
Vra3g0435 334 SMART sant 67 115 IPR001005 -
Vra3g0435 334 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0435 Vra-Chr3 5047566 5049354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0435 1 117 MYB Transcription Factor Family AT5G57620 88.889 7.18e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra3g0435 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0435 K09422 - gmx:778084 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0435 3 5047566 5049354 Vra3g0435 3 5047566 5049354 ECH