Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0434 ATGTCAAAAGATTCTGAGGAGATAAAAACCATAGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTTGTTCCTGATGCTGCAACTTCACAACTACAACAACAACAAGACCAAGTTCCAAGGGAAATGGAGACTGCTCGTGAACAACCCAACAAAGATGCTGCTGCTTCTGCTGCTTCTGCTGCTTCTGCTGCGGTTACTATGAACGGTGGTTCCATTGGTGGGGAGAAGGCAGAGAGTGTTCCCTCTGTTGGGTTCGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGAACGGTTGGAGCAGTTGTGCACGGCTGTTCACTGCCTATCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTGGACAAGATGACTCAGGAAGTGGTTAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCAATATGGGCATCATCCTGGGCAGAGATTTCGTGTTGGATGTGGAGTGGGGAGCGTCAATCCACCAAGATGAGAATCAAGTATCTGGAGACTGCGTTGAACCAGGACATTCAGTTCTTCGACACTGATGTGCGGACTTCCGATGTTGTTTTCGCCATCAACAGCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACGTTTGTTTCTGGCTTTGTTGTGGGTTTTACTGCTGTGTGGCAATTGGCTCTTGTCACTCTTGCTGTTGTACCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCCAAGCTCTCTGGCAAGAGCCAAGAAGCTCTCGCTCAAGCTGGCAACATAGTGGAACAGACGGTTGCACAAATCCGAGTGGTGCTGGCCTTCGTTGGGGAGTCCAGAGCATTACAGGCCTATTCATCAGCCTTGAGGGTTGCACAGAAGCTTGGTTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGGGCCACCTACTTTGTTGTTTTCTGCTGTTATGCACTTCTGCTGTGGTATGGAGGTTATCTTGTTAGGCACCATGCCACCAATGGAGGACTTGCAATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCATTTACGAAGGCCAGAGTAGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCGAGTATTGATCGAAATAGCGAATCTGGCATTGAACTAGAGACTGTTACTGGACTTGTGGAACTGAAAAATGTAGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAAACCATAGCTCTCGTGGGTAGCAGCGGCTCTGGTAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTACGACCCAACTTCAGGACAAGTTGTATTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGATTAGTGAGCCAAGAGCCAGCTTTGTTTGCAACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCGCATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTCGGAGAAAGGGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGGATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAAGCAACAAGTGCATTGGACTCAGAGTCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTCATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGATCTTGTTGCTGTTCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTGTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCAATGAGTAATGCCAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCTGTCAGCTCACCAATAATTGCTAGGAATTCTTCTTACGGACGGTCACCATACTCGCGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTAGATGCATCACATTCAAATTACAGGCTTGAAAAGCTGGCTTTCAAGGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGATCTGTTATTTGTGGATCTCTCAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTACTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGTTACTTGTTGATTGGACTTTCATCAACCGCACTTCTCTTCAACACGCTGCAACATTTCTTCTGGGACATTGTTGGGGAAAATCTTACCAAACGTGTGAGGGAGAAAATGCTTACGGCGGTGCTCAAAAATGAAATGGCGTGGTTTGATCAGGAGGAGAATGAGAGTGCCAGGATTGCCGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGCTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTCTTCCCTATTGTTGTTGCAGCCACTGTATTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCAAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAAGAAAAATTGTGGGTCTTTTCACCTCGAATCTCCAGGCTCCACTAAAGCGTTGCTTTTGGAAGGGACAAATTTCAGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATTTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAACGGTGCTGCTGAAACTTTAACACTGGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGAACTCCTTGACCGTAGGACTGAAATTGAACCCGATGATCAAGACGCCACTCCTTTTCCTGATCGTCTCCGTGGTGAAGTTGAACTTAAGCATGTAGATTTCTTCTATCCAACTCGCCCTGACATGCCAGTTTTTCGAGACCTCAGTCTTCGTGCAAGGGCCGGCAAAACTCTTGCTCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATAAGGAAATACAATCTGAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACAATTTATGAAAACATTGCTTATGGGCATGAGTCAGCCAGTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAGCTATCTGGAGGACAAAAGCAAAGAATAGCAGTTGCTCGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCGGTTCAGGATGCTCTAGACCGTGCCTCCTCTGGAAAAACAACCATCATTGTTGCACACAGGCTATCAACTATAAGGAATGCCAATCTGATTGCTGTGATTGATGATGGAAAAGTGGCTGAGCAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCCGATGGGATTTATGCGCGAATGATTCAGTTGCAAAGGTTCACACACACCCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4044 0.4585 MSKDSEEIKTIEQWKWSEMQGLELVPDAATSQLQQQQDQVPREMETAREQPNKDAAASAASAASAAVTMNGGSIGGEKAESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPIFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLETALNQDIQFFDTDVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALAQAGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDRNSESGIELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVVLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHSNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPIVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSERKIVGLFTSNLQAPLKRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPFPDRLRGEVELKHVDFFYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESASEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQDALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHTQVIGMASGSSSSTRPKDDEREG* 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0434 1347 ProSitePatterns ABC transporters family signature. 1220 1234 IPR017871 GO:0005524
Vra3g0434 1347 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524
Vra3g0434 1347 Gene3D - 424 689 IPR027417 -
Vra3g0434 1347 SUPERFAMILY ABC transporter transmembrane region 90 410 IPR036640 GO:0005524|GO:0016021
Vra3g0434 1347 CDD ABC_6TM_Pgp_ABCB1_D1_like 102 399 - -
Vra3g0434 1347 Pfam ABC transporter transmembrane region 759 1028 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0434 1347 Pfam ABC transporter transmembrane region 103 376 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0434 1347 Gene3D - 1073 1327 IPR027417 -
Vra3g0434 1347 Gene3D ABC transporter type 1, transmembrane domain 149 1054 IPR036640 GO:0005524|GO:0016021
Vra3g0434 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1083 1317 IPR003439 GO:0005524
Vra3g0434 1347 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 102 1324 - -
Vra3g0434 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1072 1320 IPR027417 -
Vra3g0434 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 662 IPR003439 GO:0005524
Vra3g0434 1347 CDD ABC_6TM_Pgp_ABCB1_D2_like 747 1063 - -
Vra3g0434 1347 Pfam ABC transporter 444 593 IPR003439 GO:0005524
Vra3g0434 1347 Pfam ABC transporter 1100 1248 IPR003439 GO:0005524
Vra3g0434 1347 SUPERFAMILY ABC transporter transmembrane region 745 1065 IPR036640 GO:0005524|GO:0016021
Vra3g0434 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 665 IPR027417 -
Vra3g0434 1347 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 102 1324 IPR039421 -
Vra3g0434 1347 MobiDBLite consensus disorder prediction 27 41 - -
Vra3g0434 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 758 1045 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0434 1347 SMART AAA_5 1108 1300 IPR003593 -
Vra3g0434 1347 SMART AAA_5 453 639 IPR003593 -
Vra3g0434 1347 CDD ABC_MTABC3_MDL1_MDL2 1081 1320 - -
Vra3g0434 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 391 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra3g0434 1347 MobiDBLite consensus disorder prediction 26 55 - -
Vra3g0434 1347 CDD ABC_MTABC3_MDL1_MDL2 426 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0434 Vra-Chr3 5017027 5023533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0434 77 1342 Calmodulin-binding Proteins AT2G36910 89.424 0.0 2320