Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0429 ATGGAGGTTGGAAAGAAGAAGATGCTCAAGTCTTTGATCTCAAAGGTGATGAAGGGTCTTCCGTTCTTGGCACCCAATGGAGCACGTACGAGAAGGGTTTGTTATGTGAGTGACATTGACGAGGAAAGCGAAAATGCGACGAGGGTGCCAGAAGATGTTAAGGAAGGACATTTTGCTGTTATTGCAATTCACGGTGAAGAGACCAAAAGGTTCGTTGTTGAGTTAGATTATTTATCTGATCCTGCTTTCTTGAAGCTGCTGGAGCAAGCTAGTGAAGAGTATGGCTTTCAACAAAAGGGTGCACTTGTAGTTCCTTGCAGCCCTCAAGAACTTCAGAAGATCATAGACAACAAACGACTCAATGTCACTTCCTAA 375 0.4373 MEVGKKKMLKSLISKVMKGLPFLAPNGARTRRVCYVSDIDEESENATRVPEDVKEGHFAVIAIHGEETKRFVVELDYLSDPAFLKLLEQASEEYGFQQKGALVVPCSPQELQKIIDNKRLNVTS* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0429 124 Pfam Auxin responsive protein 18 115 IPR003676 GO:0009733
Vra3g0429 124 PANTHER F8A24.8 PROTEIN 8 119 - -
Vra3g0429 124 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 8 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0429 Vra-Chr3 4968446 4969103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0429 38 106 Calmodulin-binding Proteins AT5G20810 46.377 1.14e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0429 - K14488 gmx:102661602 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0429 3 4968446 4969103 Vra8g0819 8 16873635 16874325 PCT