Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0423 ATGAAGTGTTTTACATTCTCCTATGGAGAGAAAAAAGAAGAGCCAAAAGGCTTGCGATCAACATCGGGCCGGTCAGAGAATTCCACGAATGGTGATATTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGAAGTTTCAGACAATGGCAGCACAGAATCTCTCAGGAGGAATGCAATACCCAGTTTGTCCCAGAGGTCCAGCAACCTTAGAGTGTTTACTGTTTCTGAACTGAAATCAGCCACAAGGAATTTCAGTCGCTCTGTTATGATTGGAGAGGGCGGCTTTGGGTGTGTCTACCTGGGATTGATTAAAAGTGTGGAGGTCCCCTCTGGAAGAATTGAAGTTGCTGTTAAACAGCTTAGTAAAAGGGGAATGCAGGGGCACAGGGAATGGGTGACAGAAGTGAATGTTCTCGGTGTTGTTGAGCATCCGAATCTTGTGAAACTAGTGGGTTATTGTGCAGAAGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCTAACAGAAGTGTGGAACACCATTTATCCCATCGATCAGAGGCTCCTCTCTCATGGAGTAGGAGATTGAAAATAGCACGAGATGCAGCTCGTGGATTAACATACCTGCATGAAGAAATGGGTTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTCTCAGACTTTGGGTTGGCAAGGTTGGGACCATCGGATGGACTGACTCATGTCTCAACGGCGGTTGTGGGAACAATGGGATATGCATCTCCAGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGACGTGTGGAGCTACGGAGTCTTCCTTTATGAACTCATCACCGGTAGGCGCCCTATAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTATCAGATGGGAGGAAATTTCAACTAATATTAGACCCAAGACTTGATAAGAAACAAATCTTCAAATCAGCCCATAGACTTTCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCGAAGATGAGTGAGGTATTGGAAATGGTGAATGGGATGTTAGAATCTTCCTCATCCTGTTCCAGTCCACCATTGCCCTTGAGGAGTGTGGCAAGAGTGGAAACTTCCCAGGATACTGAAACAAATAACAAGAAACGGACCATGGATCAGAAGCATGGAGAAAGTAATTGGTTTGCTAGGATGTGGAGACCAAAGCTTGACATGCAGGTCACGAATAAGCTAGAGCTGGAAGTTTCATGTCAATGGGTATAG 1317 0.4396 MKCFTFSYGEKKEEPKGLRSTSGRSENSTNGDIRRSGSELNSQEVSDNGSTESLRRNAIPSLSQRSSNLRVFTVSELKSATRNFSRSVMIGEGGFGCVYLGLIKSVEVPSGRIEVAVKQLSKRGMQGHREWVTEVNVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSEAPLSWSRRLKIARDAARGLTYLHEEMGFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPRGEQKLLEWIRPYLSDGRKFQLILDPRLDKKQIFKSAHRLSMIANRCLVKNPKNRPKMSEVLEMVNGMLESSSSCSSPPLPLRSVARVETSQDTETNNKKRTMDQKHGESNWFARMWRPKLDMQVTNKLELEVSCQWV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0423 438 PANTHER KINASE 1B 12 420 - -
Vra3g0423 438 CDD STKc_IRAK 90 368 - -
Vra3g0423 438 MobiDBLite consensus disorder prediction 21 59 - -
Vra3g0423 438 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g0423 438 MobiDBLite consensus disorder prediction 393 408 - -
Vra3g0423 438 ProSitePatterns Protein kinases ATP-binding region signature. 90 118 IPR017441 GO:0005524
Vra3g0423 438 Gene3D Phosphorylase Kinase; domain 1 64 169 - -
Vra3g0423 438 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra3g0423 438 Pfam Protein tyrosine and serine/threonine kinase 89 363 IPR001245 GO:0004672|GO:0006468
Vra3g0423 438 PANTHER OS01G0588500 PROTEIN-RELATED 12 420 - -
Vra3g0423 438 SUPERFAMILY Protein kinase-like (PK-like) 61 365 IPR011009 -
Vra3g0423 438 MobiDBLite consensus disorder prediction 1 59 - -
Vra3g0423 438 MobiDBLite consensus disorder prediction 387 408 - -
Vra3g0423 438 Gene3D Transferase(Phosphotransferase) domain 1 170 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0423 Vra-Chr3 4927154 4934021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0423 1 381 Glycoside Hydrolase AT3G07070 40.452 2.41e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra3g0423 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0423 - - gmx:100813060 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0423 3 4927154 4934021 Vra3g0423 3 4927154 4934021 ECH
Vra3g0423 3 4927154 4934021 Vra8g0853 8 18040898 18044971 PCT