Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0421 ATGTCTAATGAATTGCCAAGGTATGTGGTGAATCAAGTGACAGCTGGGAATTACGATTGTCCAAAGGTCTTAAAGTTCTTGACAGATCTCCATGCTGCATTTCGTATGCTTAATCTTCGAAATGATTTTTTTCGAAAAAATTTGATGACACACACATTTAGAAGCTTCAAGAGAAGAATAATGAAGGGGAAGTTTCTGAGAGGGTGTCTTAACAAGTGGAAGAAAGTGGGGAGTCGAGTGATCCAGTGTGGTGCCTACGGTTACTGCTGCGAATGGGAAGTGTGGCCATGGATGCAGAACGAAGGAGAATCTGATATTCCGAACGATGTGCCAAAGGGTCATTTGGTTGTGTACGTGGGAGAACACCACAAGAGATATGTGATAAAGATCACGTTGCTCCATCATCCTCTCTTCAAGACCTTGCTGGATCAGGCTCAGGATGAATACGATTTCATTGCAGACTCAAAGCTCTATATTCCTTGCACTGAACATCTTTTCCTCACTGTCCTTCGCTGTGCAGCCTCTCCACATAATCAACGACTCTCTCTCTGCGTCTGA 558 0.4373 MSNELPRYVVNQVTAGNYDCPKVLKFLTDLHAAFRMLNLRNDFFRKNLMTHTFRSFKRRIMKGKFLRGCLNKWKKVGSRVIQCGAYGYCCEWEVWPWMQNEGESDIPNDVPKGHLVVYVGEHHKRYVIKITLLHHPLFKTLLDQAQDEYDFIADSKLYIPCTEHLFLTVLRCAASPHNQRLSLCV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0421 185 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 62 185 IPR003676 GO:0009733
Vra3g0421 185 Pfam Translin family 1 48 IPR002848 GO:0043565
Vra3g0421 185 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 62 185 - -
Vra3g0421 185 Pfam Auxin responsive protein 101 172 IPR003676 GO:0009733
Vra3g0421 185 Gene3D Immunoglobulin FC, subunit C 1 38 - -
Vra3g0421 185 SUPERFAMILY Translin 1 49 IPR036081 GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0421 Vra-Chr3 4912550 4922802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0421 104 180 Calmodulin-binding Proteins AT4G34750 43.210 4.30e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0421 K14488 - gmx:100793017 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0421 3 4912550 4922802 Vra3g0421 3 4912550 4922802 ECH
Vra3g0421 3 4912550 4922802 Vra8g0850 8 17954509 17955454 PCT