Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0418 ATGGATGAAGATGGAGGGGATGTCCGTTCTGGGTGCATTGAGGGATTGGCTGAAGAGTATCAAAAAAATGCACAAGCAAATCTTCATATGAAAAATAAAAAAGGTGGCAAGGAGGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCATCCCTATTGTGTGGATCCTCCTCTCAAGTACATTCCTTTGAGGCTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGACTCTAGAGAAGTGGTTTCAAATAATAAAGTAAGTAGCATGTTGCTAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTTGCTCATGCTCACAACCGCTGGATTACAGAATCAACAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAAAGTGAACCGAAGGTTAGCAGGTGGAAAAGTGATTGGAGTATACCTCACCGCTTACTCCTTAAAAGAGAAATTGTGCATTTTGGTGGGAATGGTGACAATGACTCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATGCCACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCAAAAGGCAGGAAACTCATTCGTGATTATGAAAGTCGTCGAAAGGGAGTTGATAAACTGTCAAAAAGTAATTTTGAAGACAATGAGGAGACAAAAGCTTTTATTGTCGAATTGTCAGTGTTGCCGTTTGGAGATTCACCAGGACTTTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGTACAAAGGTCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAAGTGATTTTGTTTGTATTATCTTTGAATTGCAATAGCCAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAATAGAGATGTACGGAGTGGCATCAGGGCATTAGAGTTTTTTAGTGAAGAAAATGATATATTATTTCAAATACTGTTGTCATCTTCTGATATTGTTGTTGAGGACTTACATGAACTAAGATGCATTACATGGGAAGCGATAATAATTGATGAATGCCAGCAACCCAGAATTTTAGGACACTTGGACCATATCAAGATTTTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGACATGATTATATCAAACTGCTTTCATTCCTCAAGTCTGCACATCATGAACCAAGTATTGCTCCAATAGAAATTTCTTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATCTGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCTCATTTGCAGCTTGAACAGTATTGTTCAATGCTGCTTTCAAACTTAATTTTGTTATGCTCAGGCCAGAAGTCCGATGTAGTTGGTGCGCTCCATGAGCTTATTATCTCAACAAGGAAGTGCTGTAACCACCCTTATCTCCTGGAGCCAGCACTGCATAATTCTGTTGCTAAGGGTCTACCTGTTGAAGAACATTTAGATATTGGTATAAAAGCAAGCGGAAAACTCCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGTCGTGGGTTAAGGGTGTTAATATTATTCCAGTCATCTTGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTTTAGATTGCTATGTGCGATATGATAGAGCTTATACCCCTAAAACAAAGGAAGCTGCTTTAGACACATTTAATGATCGAGACAGTGGTAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTCAGTGGACATTGTTATATTGTTTGACAGTGATTTTGACCCTCAAAATGACCTAAGAGGTTTGCAAAGGATGTCTATCAGCACACAGTTGAAACAATTAACCGTTCTCAGATTGTACTCATATTACACTGTTGAAGAAAGGATTTTAATGCTTGCAAAGGAGGGTATATCTCTTGACAGTAACGTGCGGTTGATTAGTCATAGTATTTCTCACACTCTTCTAAAATGGGGCACCTCTCATCTGTTTAATAAGCTGGATGATTTACATGCCAGTGTAACTGCTGTTTCTACTCCAGACATTGCAGATCAAACTCTTCTGCATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGATGCTGACGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATTCGAGGAACATTTTATTGCTTGGAGAAAGAATAATGAAGGAACTGGGCAGTGAGCCAAGTTCTTTTTCCTGGAGTGATCTTGAAGGAAAGTATCCTCAATGGAAATTTTTGTCTGTTTCGTCTCAGAGGATGAGGAGTAGGGTCAAACATTCCGATTACATAATAAATGAATCTGAATGTAAAGATCATACAATTATGGGAAAGAGGTCAGCATCAAATGCTTCCAAGAAGAGTAAAGTGTCCAAGGATAATTTTGATCATAATTTGAGGAAGCTGGCCAAGGATAAAGTTGAGCCAAAGAGGAGGAAAGTGTCAAAAGACATTGTTGAAACAGAGGGGAGGGAACCGTCAAATCATGCCATTGGTCCTAAGACTAGGAAGGGGTTCAATGGTATTGTTAATTCTGGTGGCAGGAAAATGTCCAAGAAAATTCTTGATTCCAAATATCGGAAACCAAGATTGAGGAACAAGAAGAATTCAAGTGTTTCCAATAGTACTAGTAAATCAAATGGTACAGATGGTTTGTCTAGTGTACTTGGTTCCTCAGGGCGTCCTTTGGCCAATGAAACTACGGGAGAAACTACTACAAACATGCAACTTTCAGAGAAAAGGAAACTTCTTGATGGACCAAATAGTATCAAATTCTTGCCAAAGTCGGATATTTCAGGTCTTTGTGAAATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCAGAGGATTCTTGAGCATATATTCAAACAGTACAATGTTAATTTCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACATGACATTGATAAGAAGGTTTCACTCACTCTAGCAAAACTGTACTTGAATTTCAATTGCAATGAAGAGGAAGCCACCAATGTCTACGCAGAACTTTGGAAACATGCAAAGACAATTTCTAATTATATACAAAATGGACTGTGTGTTGAGAGTATAAATGGTGCTTCAGAAACTAACATGCCCGAGCTGAATGATTTGACCGAGGTGAAGCAGAAGGATTTTCTGGATACTTGTGTTACAAAACTCGTGAAATCTGTCACAAAAGAACATGATCTTCAAACGAAAACTCCCACAACAGTGGTTTCATGTGACCAGACTTCTACTTATGAAATTTGTTCATTTGCAAAGACACCCGCTAGTTTTCCTGTGAAAGCAATTGCTCTCTCCTCGGAGTTAGGCTCAGAAAATGACGTCATGGAATCTACACCCTTAATAACTTCAGAAGATTCAGCTCTTGAGCACGGGGGCAATGATGTCAACCCTCATACTGATTATTTGGAAAAACAGAGTCCTATTAGAAGTACAGATATTACACAATCTGATGGCAAAGTTTGTGAAGATCCTCAAATTTTAGAGAATGAATTGGTTGCTATTGAGAATTTTATGAATATGCCTACTCATTCTTTGCAGCTTGACAGTGTTGATGCAAATGCTGTAACTTCTATTGGTTCTGCTGTTCCTGAGGCCAGACAGTGGGGCAGTGTATTGAGTCCTGTATGTGATGAGTCAACTGGACTGAAGTTTGCTGAGACAACCTTTCCAAATATCCAACCATCGGATGCTAATTTGTGGTCGTTGCCTCTGAGGGAATACCCAGTTCTCATCAAGTCCACTCAAAATTAA 4086 0.3901 MDEDGGDVRSGCIEGLAEEYQKNAQANLHMKNKKGGKEVVCSNCLGGGVLLCCSGKGCQKRYHPYCVDPPLKYIPLRLWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVSSMLLVMQREYFVKYQGLAHAHNRWITESTMLLEAPKLLAKFKSEPKVSRWKSDWSIPHRLLLKREIVHFGGNGDNDSICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIRDYESRRKGVDKLSKSNFEDNEETKAFIVELSVLPFGDSPGLYNQYLSYVNKLRMCWYKGQNALIVDDQIDQERIIKVILFVLSLNCNSQRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDVRSGIRALEFFSEENDILFQILLSSSDIVVEDLHELRCITWEAIIIDECQQPRILGHLDHIKILKTEMKLLLVSGQIKEDRHDYIKLLSFLKSAHHEPSIAPIEISFSASISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQYCSMLLSNLILLCSGQKSDVVGALHELIISTRKCCNHPYLLEPALHNSVAKGLPVEEHLDIGIKASGKLLLLEKILLEAKSRGLRVLILFQSSCGSGSIGDILDDVLCQRFGLDCYVRYDRAYTPKTKEAALDTFNDRDSGKFVFLMENRACLPSVKLSSVDIVILFDSDFDPQNDLRGLQRMSISTQLKQLTVLRLYSYYTVEERILMLAKEGISLDSNVRLISHSISHTLLKWGTSHLFNKLDDLHASVTAVSTPDIADQTLLHDVLCELSSQLVCDADDIDCHEWSFISTIQQNGGEYSRNILLLGERIMKELGSEPSSFSWSDLEGKYPQWKFLSVSSQRMRSRVKHSDYIINESECKDHTIMGKRSASNASKKSKVSKDNFDHNLRKLAKDKVEPKRRKVSKDIVETEGREPSNHAIGPKTRKGFNGIVNSGGRKMSKKILDSKYRKPRLRNKKNSSVSNSTSKSNGTDGLSSVLGSSGRPLANETTGETTTNMQLSEKRKLLDGPNSIKFLPKSDISGLCEILHFPKNVKVVAQRILEHIFKQYNVNFQEVSTVQAFEISVCWLAASLLKHDIDKKVSLTLAKLYLNFNCNEEEATNVYAELWKHAKTISNYIQNGLCVESINGASETNMPELNDLTEVKQKDFLDTCVTKLVKSVTKEHDLQTKTPTTVVSCDQTSTYEICSFAKTPASFPVKAIALSSELGSENDVMESTPLITSEDSALEHGGNDVNPHTDYLEKQSPIRSTDITQSDGKVCEDPQILENELVAIENFMNMPTHSLQLDSVDANAVTSIGSAVPEARQWGSVLSPVCDESTGLKFAETTFPNIQPSDANLWSLPLREYPVLIKSTQN* 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0418 1361 MobiDBLite consensus disorder prediction 1230 1263 - -
Vra3g0418 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 726 IPR027417 -
Vra3g0418 1361 ProSiteProfiles Zinc finger PHD-type profile. 38 87 IPR019787 -
Vra3g0418 1361 Gene3D - 273 488 IPR038718 -
Vra3g0418 1361 Gene3D - 99 161 - -
Vra3g0418 1361 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 1163 - -
Vra3g0418 1361 MobiDBLite consensus disorder prediction 885 927 - -
Vra3g0418 1361 Pfam SNF2-related domain 306 545 IPR000330 GO:0005524|GO:0140658
Vra3g0418 1361 MobiDBLite consensus disorder prediction 873 1009 - -
Vra3g0418 1361 Pfam Chromo (CHRromatin Organisation MOdifier) domain 100 159 IPR023780 -
Vra3g0418 1361 MobiDBLite consensus disorder prediction 1244 1263 - -
Vra3g0418 1361 Gene3D - 489 723 IPR027417 -
Vra3g0418 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 448 IPR027417 -
Vra3g0418 1361 SUPERFAMILY Chromo domain-like 59 158 IPR016197 -
Vra3g0418 1361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 94 IPR013083 -
Vra3g0418 1361 Gene3D - 163 236 - -
Vra3g0418 1361 SMART chromo_7 169 238 IPR000953 -
Vra3g0418 1361 SMART chromo_7 97 162 IPR000953 -
Vra3g0418 1361 SMART PHD_3 40 85 IPR001965 -
Vra3g0418 1361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 741 IPR001650 -
Vra3g0418 1361 MobiDBLite consensus disorder prediction 964 1008 - -
Vra3g0418 1361 ProSiteProfiles Chromo and chromo shadow domain profile. 98 169 IPR000953 -
Vra3g0418 1361 ProSitePatterns Zinc finger PHD-type signature. 41 84 IPR019786 -
Vra3g0418 1361 SUPERFAMILY Chromo domain-like 167 236 IPR016197 -
Vra3g0418 1361 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 23 1163 - -
Vra3g0418 1361 SUPERFAMILY FYVE/PHD zinc finger 28 88 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0418 Vra-Chr3 4858824 4892503 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra3g0418 SNF2_N 3.5e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0418 - K11643 gmx:100813574 1731.46