Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0413 ATGGCCAAGGACATAGAAACCGAGGTACCAACTGAATTGACCCACAAGGACTATTACGACCCACCCCCAGTCCCATTCTACGACGCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGGGCTCTCATCGCCGAGTTCGTCGCCACCCTTCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGACCCACATCGGCAACTCCTGCGATGGCGTCGGCATTCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCGGGCATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTTGCCAGGAAGGTGTCGCTGGTGAGAGCAATCGCGTACATAGTGGCTCAGAGCTTGGGAGCTATATCTGGCGCGGGGCTGGTAAAGGCATTTCAGAAGAGCTACTACAACAGGTACAATGGTGGCGTGAACTTGCTCTCTGATGGGTACAGTAAAGGCACTGGCTTGGGCGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTATCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTCTCGGTGTTCTTGGTTCACTTGGCCACCATCCCTGTCACCGGCACTGGCATCAACCCCGCCAGAAGCTTCGGCCCTGCTGTCATATTCAACAACGAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTCGGACCTTTCATCGGTGCAGCCATTGCTGCAATCTACCACCAGTACGTATTGAGGGCACATGCGGTAAAGGCTCTCGGGTCATTAGGGAGCTCCTCGCACCTGTAA 855 0.5556 MAKDIETEVPTELTHKDYYDPPPVPFYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQTHIGNSCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYIVAQSLGAISGAGLVKAFQKSYYNRYNGGVNLLSDGYSKGTGLGAEIIGTFVLVYTVLSATDPKRKARDSHVPVLAPLPIGFSVFLVHLATIPVTGTGINPARSFGPAVIFNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAHAVKALGSLGSSSHL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0413 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Vra3g0413 284 PANTHER AQUAPORIN PIP2-4-RELATED 1 280 - -
Vra3g0413 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Vra3g0413 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Vra3g0413 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 TIGRFAM MIP: MIP family channel proteins 43 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra3g0413 284 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Vra3g0413 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0413 Vra-Chr3 4752001 4754296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0413 1 280 Major Intrinsic Protein MIP AT5G60660 78.445 2.53e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0413 K09872 - gmx:100785783 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0413 3 4752001 4754296 Vra3g0413 3 4752001 4754296 ECH
Vra3g0413 3 4752001 4754296 Vra4g0321 4 5896232 5897778 ECH
Vra3g0413 3 4752001 4754296 Vra2g0722 2 6180357 6182031 ECH